RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 PIM2Q9P1W9 311 aa26.97■■□□□ 1.91
CDX1-201ENST00000231656 ZFYP08048 801 aaPredicted RBP26.97■■□□□ 1.91
CDX1-201ENST00000231656 KLHL34Q8N239 644 aa26.97■■□□□ 1.91
CDX1-201ENST00000231656 CD209Q9NNX6 404 aa26.97■■□□□ 1.91
CDX1-201ENST00000231656 LIMCH1Q9UPQ0 1083 aa26.97■■□□□ 1.91
CDX1-201ENST00000231656 RIMBP2O15034 1052 aa26.96■■□□□ 1.91
CDX1-201ENST00000231656 WASHC4Q2M389 1173 aa26.96■■□□□ 1.91
CDX1-201ENST00000231656 PDRG1Q9NUG6 133 aa26.96■■□□□ 1.91
CDX1-201ENST00000231656 U3KPZ7 1027 aaPredicted RBP26.96■■□□□ 1.91
CDX1-201ENST00000231656 ZC3H12CQ9C0D7 883 aaKnown RBP26.95■■□□□ 1.9
CDX1-201ENST00000231656 ZDHHC9Q9Y397 364 aa26.95■■□□□ 1.9
CDX1-201ENST00000231656 TAF6LQ9Y6J9 622 aa26.95■■□□□ 1.9
CDX1-201ENST00000231656 IL1R1P14778 569 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 PSMA5P28066 241 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 SLC9C2Q5TAH2 1124 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 ZSCAN25Q6NSZ9 544 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 RTFDC1Q9BY42 306 aaPredicted RBP26.94■■□□□ 1.9
CDX1-201ENST00000231656 ADD2P35612 726 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 MAP3K12Q12852 859 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 EYA3Q99504 573 aa26.94■■□□□ 1.9
CDX1-201ENST00000231656 BAG4O95429 457 aaKnown RBP26.93■■□□□ 1.9
CDX1-201ENST00000231656 CHAF1AQ13111 956 aaPredicted RBP26.93■■□□□ 1.9
CDX1-201ENST00000231656 LRP2BPQ9P2M1 347 aa26.93■■□□□ 1.9
CDX1-201ENST00000231656 ABCF2Q9UG63 623 aa26.93■■□□□ 1.9
CDX1-201ENST00000231656 WWC3Q9ULE0 1092 aa26.93■■□□□ 1.9
CDX1-201ENST00000231656 CHD4Q14839 1912 aa26.93■■□□□ 1.9
CDX1-201ENST00000231656 MAST3O60307 1309 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 TRAK2O60296 914 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 GRIPAP1Q4V328 841 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 PDE6AP16499 860 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 CCDC93Q567U6 631 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 OSBP2Q969R2 916 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 COA1Q9GZY4 146 aa26.92■■□□□ 1.9
CDX1-201ENST00000231656 COL9A3Q14050 684 aaPredicted RBP26.91■■□□□ 1.9
CDX1-201ENST00000231656 UBE3CQ15386 1083 aa26.91■■□□□ 1.9
CDX1-201ENST00000231656 DALRD3Q5D0E6 543 aaKnown RBP26.91■■□□□ 1.9
CDX1-201ENST00000231656 APPBP2Q92624 585 aa26.91■■□□□ 1.9
CDX1-201ENST00000231656 DSCC1Q9BVC3 393 aa26.91■■□□□ 1.9
CDX1-201ENST00000231656 JAG2Q9Y219 1238 aa26.91■■□□□ 1.9
CDX1-201ENST00000231656 SRCAPQ6ZRS2 3230 aa26.9■■□□□ 1.9
CDX1-201ENST00000231656 TCRBV5S4A2TA0A5A2 114 aa26.9■■□□□ 1.9
CDX1-201ENST00000231656 RTKN2Q8IZC4 609 aa26.9■■□□□ 1.9
CDX1-201ENST00000231656 ALDH8A1Q9H2A2 487 aaPredicted RBP26.9■■□□□ 1.9
CDX1-201ENST00000231656 ZNF532Q9HCE3 1301 aa26.89■■□□□ 1.9
CDX1-201ENST00000231656 PTMSP20962 102 aa26.89■■□□□ 1.9
CDX1-201ENST00000231656 KRT32Q14532 448 aa26.89■■□□□ 1.9
CDX1-201ENST00000231656 BLOC1S2Q6QNY1 142 aa26.89■■□□□ 1.9
CDX1-201ENST00000231656 MAGEB6Q8N7X4 407 aa26.89■■□□□ 1.9
CDX1-201ENST00000231656 LARP6Q9BRS8 491 aaKnown RBP26.89■■□□□ 1.9
CDX1-201ENST00000231656 LAMA4Q16363 1823 aa26.89■■□□□ 1.9
CDX1-201ENST00000231656 M0R2C6 588 aa26.89■■□□□ 1.89
CDX1-201ENST00000231656 LARGE1O95461 756 aa26.89■■□□□ 1.89
CDX1-201ENST00000231656 RPS6KB1P23443 525 aa26.89■■□□□ 1.89
CDX1-201ENST00000231656 WDR66Q8TBY9 1149 aa26.89■■□□□ 1.89
CDX1-201ENST00000231656 ZSCAN31Q96LW9 406 aaPredicted RBP26.89■■□□□ 1.89
CDX1-201ENST00000231656 SALL1Q9NSC2 1324 aa26.88■■□□□ 1.89
CDX1-201ENST00000231656 DOK7Q18PE1 504 aa26.88■■□□□ 1.89
CDX1-201ENST00000231656 SUPT20HQ8NEM7 779 aa26.88■■□□□ 1.89
CDX1-201ENST00000231656 PUS7LQ9H0K6 701 aaKnown RBP26.88■■□□□ 1.89
CDX1-201ENST00000231656 RAI14Q9P0K7 980 aa26.88■■□□□ 1.89
CDX1-201ENST00000231656 CCDC88AQ3V6T2 1871 aa26.87■■□□□ 1.89
CDX1-201ENST00000231656 BRD1O95696 1058 aa26.87■■□□□ 1.89
CDX1-201ENST00000231656 CYP21A2P08686 494 aa26.87■■□□□ 1.89
CDX1-201ENST00000231656 SOGA3Q5TF21 947 aa26.87■■□□□ 1.89
CDX1-201ENST00000231656 NLGN2Q8NFZ4 835 aa26.87■■□□□ 1.89
CDX1-201ENST00000231656 SH2B1Q9NRF2 756 aaPredicted RBP26.87■■□□□ 1.89
CDX1-201ENST00000231656 PSMD1Q99460 953 aa26.86■■□□□ 1.89
CDX1-201ENST00000231656 G3V3G9 751 aa26.85■■□□□ 1.89
CDX1-201ENST00000231656 HSPD1P10809 573 aaKnown RBP26.85■■□□□ 1.89
CDX1-201ENST00000231656 PRDX5P30044 214 aa26.85■■□□□ 1.89
CDX1-201ENST00000231656 KIAA2012Q0VF49 1180 aa26.85■■□□□ 1.89
CDX1-201ENST00000231656 DCAF8Q5TAQ9 597 aa26.85■■□□□ 1.89
CDX1-201ENST00000231656 AOC3Q16853 763 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.84■■□□□ 1.89
CDX1-201ENST00000231656 FAM205AQ6ZU69 1335 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 GOLGA6L22H0YM25 854 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 SPTY2D1Q68D10 685 aaPredicted RBP26.84■■□□□ 1.89
CDX1-201ENST00000231656 ZNF384Q8TF68 577 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 NEK1Q96PY6 1258 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 DBNDD1Q9H9R9 158 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 TPCN1Q9ULQ1 816 aa26.84■■□□□ 1.89
CDX1-201ENST00000231656 MAST2Q6P0Q8 1798 aa26.83■■□□□ 1.89
CDX1-201ENST00000231656 ST3GAL1Q11201 340 aa26.83■■□□□ 1.89
CDX1-201ENST00000231656 ANKRD1Q15327 319 aa26.83■■□□□ 1.89
CDX1-201ENST00000231656 ME3Q16798 604 aa26.83■■□□□ 1.89
CDX1-201ENST00000231656 PODNQ7Z5L7 613 aa26.83■■□□□ 1.89
CDX1-201ENST00000231656 NSUN4Q96CB9 384 aaKnown RBP26.83■■□□□ 1.89
CDX1-201ENST00000231656 FER1L6Q2WGJ9 1857 aa26.83■■□□□ 1.88
CDX1-201ENST00000231656 GPAA1O43292 621 aa26.82■■□□□ 1.88
CDX1-201ENST00000231656 GTF2IP78347 998 aa26.82■■□□□ 1.88
CDX1-201ENST00000231656 MECOMQ03112 1051 aa26.82■■□□□ 1.88
CDX1-201ENST00000231656 TOB2Q14106 344 aaPredicted RBP26.82■■□□□ 1.88
CDX1-201ENST00000231656 BCS1LQ9Y276 419 aa26.82■■□□□ 1.88
CDX1-201ENST00000231656 CYP7A1P22680 504 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 SKOR2Q2VWA4 1001 aaPredicted RBP26.81■■□□□ 1.88
CDX1-201ENST00000231656 STOX1Q6ZVD7 989 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 SCN9AQ15858 1988 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 PPIP5K2O43314 1243 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 LDHBP07195 334 aaKnown RBP26.81■■□□□ 1.88
CDX1-201ENST00000231656 NAA16Q6N069 864 aaPredicted RBP26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms