RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TBC1D28Q2M2D7 210 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 C6orf183Q5T699 404 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 LCN8Q6JVE9 175 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CCDC121Q6ZUS5 278 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 AHSA2Q719I0 299 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 KTN1-AS1Q86SY8 53 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 MRPL52Q86TS9 123 aaKnown RBP-0.1□□□□□ -2.43
VPS35-212ENST00000640313 UMODL1-AS1Q8N2C9 162 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 ZNF565Q8N9K5 539 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CCDC112Q8NEF3 446 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 SGMS2Q8NHU3 365 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 ZNF675Q8TD23 568 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 MBD3L1Q8WWY6 194 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CIDECQ96AQ7 238 aaPredicted RBP-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CCDC127Q96BQ5 260 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CPNE2Q96FN4 548 aaPredicted RBP-0.1□□□□□ -2.43
VPS35-212ENST00000640313 OBSCN-AS1Q96MR7 158 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 TMEM56Q96MV1 263 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CATSPER2Q96P56 530 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 OR7D2Q96RA2 312 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 ACBD6Q9BR61 282 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 MIEN1Q9BRT3 115 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 COPS4Q9BT78 406 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 DOHHQ9BU89 302 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 MED18Q9BUE0 208 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 HINT2Q9BX68 163 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 UGT2B28Q9BY64 529 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CHST6Q9GZX3 395 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 TMEM222Q9H0R3 208 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 RAB1BQ9H0U4 201 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 HAUS4Q9H6D7 363 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 TMBIM4Q9HC24 238 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 CHRAC1Q9NRG0 131 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 NRBP2Q9NSY0 501 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 MS4A12Q9NXJ0 267 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 IFNKQ9P0W0 207 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 TAAR3PQ9P1P4 343 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 MRM2Q9UI43 246 aaKnown RBP-0.1□□□□□ -2.43
VPS35-212ENST00000640313 ENPP5Q9UJA9 477 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 SNX10Q9Y5X0 201 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 KDM5BQ9UGL1 1544 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 SMARCA4P51532 1647 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 KIF24Q5T7B8 1368 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 HEATR5BQ9P2D3 2071 aa-0.1□□□□□ -2.43
VPS35-212ENST00000640313 HIVEP3Q5T1R4 2406 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PKHD1P08F94 4074 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 SETD5Q9C0A6 1442 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 FLNCQ14315 2725 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ASCC3Q8N3C0 2202 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PTPRBP23467 1997 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 EXPH5Q8NEV8 1989 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PCDH15Q96QU1 1955 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TMED7-TICAM2A0A0A6YYA0 188 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 A0A0J9YW62 118 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 A0A1B0GW15 77 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 MEIS3P1A6NDR6 274 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 GOLGA6L10A6NI86 522 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 EFCAB9A8MZ26 197 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 H3BT86 120 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 M0R2N4 97 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TXNDC9O14530 226 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 INE1O15225 51 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CRXO43186 299 aaPredicted RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 GSTZ1O43708 216 aaPredicted RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CYTH3O43739 400 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 OR2T1O43869 369 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ORC5O43913 435 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 SCN2BO60939 215 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ADAP1O75689 374 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ARL6IP5O75915 188 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PSMG1O95456 288 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 NSA2O95478 260 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 MT-CO2P00403 227 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 HBZP02008 142 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 KRT7P08729 469 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TRGC1P0CF51 173 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 IL9P15248 144 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 NQO2P16083 231 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CXCL2P19875 107 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 PTNP21246 168 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 F8A1P23610 371 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 ATP6V0CP27449 155 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CALRP27797 417 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CA5AP35218 305 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 DEKP35659 375 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CRATP43155 626 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RPL28P46779 137 aaKnown RBP-0.11□□□□□ -2.43
VPS35-212ENST00000640313 KCNJ3P48549 501 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 DLX6P56179 175 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CTBP2P56545 445 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 H2BFSP57053 126 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TMEM33P57088 247 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 CARD18P57730 90 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 FXYD7P58549 80 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TAS2R20P59543 309 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TPI1P60174 286 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 UBE2KP61086 200 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 TBPL1P62380 186 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 VSNL1P62760 191 aa-0.11□□□□□ -2.43
VPS35-212ENST00000640313 RPS24P62847 133 aaKnown RBP-0.11□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms