RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 TMED3Q9Y3Q3 217 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 KIAA2026Q5HYC2 2103 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 MED13LQ71F56 2210 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 ABCA4P78363 2273 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 SMCO3A2RU48 225 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 ZNF728P0DKX0 622 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 AADACP22760 399 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 TMPRSS3P57727 454 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 C4orf17Q53FE4 359 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 Q9N2K0 584 aa9.68□□□□□ -0.86
CLN6-217ENST00000636964 NAPSAO96009 420 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 CRYBA4P53673 196 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 PIGPP57054 158 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 GPHA2Q96T91 129 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 SYT3Q9BQG1 590 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 PLK3Q9H4B4 646 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 OR2H2O95918 312 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 CRYAAP02489 173 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 EIF5AP63241 154 aaKnown RBP9.67□□□□□ -0.86
CLN6-217ENST00000636964 Q6P435 159 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 TRAT1Q6PIZ9 186 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 ZNF705AQ6ZN79 300 aaPredicted RBP9.67□□□□□ -0.86
CLN6-217ENST00000636964 C11orf53Q8IXP5 236 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 OR2Z1Q8NG97 314 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 POLDIP2Q9Y2S7 368 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 MDKP21741 143 aaPredicted RBP9.67□□□□□ -0.86
CLN6-217ENST00000636964 RIPPLY3P57055 190 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 HERPUD1Q15011 391 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 ABCA11PQ4W5N1 156 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 COMMD1Q8N668 190 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 GINS3Q9BRX5 216 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 TBL2Q9Y4P3 447 aaKnown RBP9.67□□□□□ -0.86
CLN6-217ENST00000636964 PLCE1Q9P212 2302 aa9.67□□□□□ -0.86
CLN6-217ENST00000636964 DIDO1Q9BTC0 2240 aaKnown RBP9.67□□□□□ -0.86
CLN6-217ENST00000636964 F6UZH7 168 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 PGA5P0DJD9 388 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 ERVK11-1P61568 191 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 DLK1P80370 383 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 IAH1Q2TAA2 248 aaPredicted RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 SMIM21Q3B7S5 101 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 SOHLH1Q5JUK2 328 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 SPSB3Q6PJ21 355 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 MRPL30Q8TCC3 161 aaKnown RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 TP53RKQ96S44 253 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 PCGF1Q9BSM1 259 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 CTSDP07339 412 aaPredicted RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 GGNBP1Q5YKI7 109 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 WFDC8Q8IUA0 241 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 SGPP2Q8IWX5 399 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 PLPPR1Q8TBJ4 325 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 FAM222BQ8WU58 562 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 IL1F10Q8WWZ1 152 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 MRPL24Q96A35 216 aaKnown RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 CXXC4Q9H2H0 198 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 PPP1R3CQ9UQK1 317 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 LSM5Q9Y4Y9 91 aaKnown RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 CHD3Q12873 2000 aaKnown RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 IGKV1-6A0A0C4DH72 117 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 K7N7A8 449 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 DLL1O00548 723 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 SEC11BP0C7V7 166 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 KITLGP21583 273 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 CCKARP32238 428 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 HERV-K104P61576 105 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 HERV-K104P63124 156 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 NKX6-1P78426 367 aaPredicted RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 IL13RA2Q14627 380 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 JOSD1Q15040 202 aaPredicted RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 SPRNQ5BIV9 151 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 SP5Q6BEB4 398 aaPredicted RBP9.66□□□□□ -0.86
CLN6-217ENST00000636964 OR4C5Q8NGB2 326 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 SNX22Q96L94 193 aa9.66□□□□□ -0.86
CLN6-217ENST00000636964 PPYP01298 95 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 EPHA1P21709 976 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 TFPI2P48307 235 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 ASCL1P50553 236 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 MBNL2Q5VZF2 373 aaKnown RBP9.65□□□□□ -0.86
CLN6-217ENST00000636964 BOD1L2Q8IYS8 172 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 RTN4IP1Q8WWV3 396 aaPredicted RBP9.65□□□□□ -0.86
CLN6-217ENST00000636964 DECR2Q9NUI1 292 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 TUBD1Q9UJT1 453 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 IFNL4K9M1U5 179 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 SLC33A1O00400 549 aaPredicted RBP9.65□□□□□ -0.86
CLN6-217ENST00000636964 SRP19P09132 144 aaKnown RBP9.65□□□□□ -0.86
CLN6-217ENST00000636964 PET100P0DJ07 73 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 SPIN3Q5JUX0 258 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 SLC2A9Q9NRM0 540 aa9.65□□□□□ -0.86
CLN6-217ENST00000636964 TRAV26-1A0A087WT03 109 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 A0A087WWC5 75 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 A0A1B0GW64 132 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 CRYM-AS1A6NIL9 109 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 AMBPP02760 352 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 TK1P04183 234 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 OR5AC1P0C628 307 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 BRS3P32247 399 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 RND3P61587 244 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 WDR82Q6UXN9 313 aa9.64□□□□□ -0.87
CLN6-217ENST00000636964 TMEM182Q6ZP80 229 aaPredicted RBP9.64□□□□□ -0.87
CLN6-217ENST00000636964 LINC00596Q86U02 117 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms