RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LRRC29Q8WV35 223 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 R3HDM4Q96D70 268 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 PARLQ9H300 379 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 FZR1Q9UM11 496 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 WDR83OSQ9Y284 106 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 TRAV17A0A0B4J275 112 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 SOX15O60248 233 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 PROP1O75360 226 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 GZMHP20718 246 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 CFHR2P36980 270 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 LINC00205P59089 165 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 PDLIM3Q53GG5 364 aaPredicted RBP10.62□□□□□ -0.71
LINC00540-203ENST00000631321 GFI1BQ5VTD9 330 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 TGIF2LYQ8IUE0 185 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 OR10A7Q8NGE5 316 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 QTRT1Q9BXR0 403 aaKnown RBP10.62□□□□□ -0.71
LINC00540-203ENST00000631321 ZNF71Q9NQZ8 489 aaPredicted RBP10.62□□□□□ -0.71
LINC00540-203ENST00000631321 JPT1Q9UK76 154 aa10.62□□□□□ -0.71
LINC00540-203ENST00000631321 CACNA1GO43497 2377 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 SMCO3A2RU48 225 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 DEFB108AA8MXU0 73 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 SRRM5B3KS81 715 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 HMGB3O15347 200 aaKnown RBP10.61□□□□□ -0.71
LINC00540-203ENST00000631321 RBFOX2O43251 390 aaKnown RBP eCLIP10.61□□□□□ -0.71
LINC00540-203ENST00000631321 CGAP01215 116 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 OR9G9P0C7N8 305 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 HNF4GQ14541 408 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 ACOT6Q3I5F7 207 aaPredicted RBP10.61□□□□□ -0.71
LINC00540-203ENST00000631321 LURAP1LQ8IV03 231 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 GATAD1Q8WUU5 269 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 RPUSD4Q96CM3 377 aaKnown RBP10.61□□□□□ -0.71
LINC00540-203ENST00000631321 DCTN5Q9BTE1 182 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 GPR61Q9BZJ8 451 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 OR6C3Q9NZP0 311 aa10.61□□□□□ -0.71
LINC00540-203ENST00000631321 IGKV1D-17A0A075B6S4 117 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 YPEL1O60688 119 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 RBMXL2O75526 392 aaKnown RBP10.6□□□□□ -0.71
LINC00540-203ENST00000631321 TNFSF13O75888 250 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 HPRT1P00492 218 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 GPR12P47775 334 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 P2RY6Q15077 328 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 OR51G1Q8NGK1 321 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 OR10D4PQ8NGN7 298 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 OR52E5Q8NH55 327 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 NEIL1Q96FI4 390 aaPredicted RBP10.6□□□□□ -0.71
LINC00540-203ENST00000631321 YPEL2Q96QA6 119 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 AHRRA9YTQ3 701 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 VENTXO95231 258 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 EGR1P18146 543 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 SPCS3P61009 180 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 MORN2Q502X0 79 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 SPINK9Q5DT21 86 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 PIP4P1Q86T03 277 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 OR4F5Q8NH21 305 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 RAB1CQ92928 201 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 STARD4Q96DR4 205 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 SNX22Q96L94 193 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 OR4F4Q96R69 305 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 PITPNC1Q9UKF7 332 aa10.6□□□□□ -0.71
LINC00540-203ENST00000631321 H7BYZ3 331 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 F2RL2O00254 374 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 MGST3O14880 152 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 PAGE4O60829 102 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 CDC34P49427 236 aaPredicted RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 RPS16P62249 146 aaKnown RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 SRSF6Q13247 344 aaKnown RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 OR4X1Q8NH49 305 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 ANAPC16Q96DE5 110 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 DKK4Q9UBT3 224 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 SLC25A15Q9Y619 301 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 CHD3Q12873 2000 aaKnown RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 FRYQ5TBA9 3013 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 TRAV20A0A0B4J274 112 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 MPDU1O75352 247 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 CD1BP29016 333 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 VDAC2P45880 294 aaPredicted RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 RPP30P78346 268 aaKnown RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 EDDM3AQ14507 147 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 BHLHA15Q7RTS1 189 aaPredicted RBP10.59□□□□□ -0.71
LINC00540-203ENST00000631321 PPP1R35Q8TAP8 253 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 Q8TCH9 128 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 PROCRQ9UNN8 238 aa10.59□□□□□ -0.71
LINC00540-203ENST00000631321 PCNX2A6NKB5 2137 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 ZNF729A6NN14 1252 aaPredicted RBP10.58□□□□□ -0.72
LINC00540-203ENST00000631321 FCGR3BO75015 233 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 GALR1P47211 349 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 TMPRSS3P57727 454 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 LOXL3P58215 753 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 MSMPQ1L6U9 139 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 FAM209BQ5JX69 171 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 OR2Z1Q8NG97 314 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 OPN3Q9H1Y3 402 aaPredicted RBP10.58□□□□□ -0.72
LINC00540-203ENST00000631321 NCOR1P1Q9H4R4 102 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 ASCL3Q9NQ33 180 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 GNG12Q9UBI6 72 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 GAB2Q9UQC2 676 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 PRSS46E5RG02 174 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 ITGB1BP1O14713 200 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 HRASP01112 189 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 GYPAP02724 150 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms