RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PSMD7P51665 324 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 FXYD7P58549 80 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TAS2R20P59543 309 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TBPL1P62380 186 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 NUMA1Q14980 2115 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 USF2Q15853 346 aaPredicted RBP0.12□□□□□ -2.39
SCN1A-208ENST00000625916 EXOC3L4Q17RC7 722 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM249Q2WGJ8 235 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 MESTQ5EB52 335 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 KIAA2026Q5HYC2 2103 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 C10orf55Q5SWW7 151 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 C9orf64Q5T6V5 341 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.12□□□□□ -2.39
SCN1A-208ENST00000625916 UMODL1-AS1Q8N2C9 162 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 SLC22A24Q8N4F4 322 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 PACRGLQ8N7B6 248 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 LRRC20Q8TCA0 184 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 LRRC45Q96CN5 670 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TLCD1Q96CP7 247 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 MS4A6EQ96DS6 147 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM56Q96MV1 263 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM208Q9BTX3 173 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 PRRG3Q9BZD7 231 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 EMC3Q9P0I2 261 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 ZFHX2Q9C0A1 2572 aaPredicted RBP0.12□□□□□ -2.39
SCN1A-208ENST00000625916 INTS1Q8N201 2190 aaKnown RBP0.12□□□□□ -2.39
SCN1A-208ENST00000625916 NPATQ14207 1427 aa0.12□□□□□ -2.39
SCN1A-208ENST00000625916 FREM1Q5H8C1 2179 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 A0A087WUU8 490 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 TRAV8-1A0A0A6YYK1 113 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 F5H5K5 113 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 H0YC42 278 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 H3BT86 120 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 GOLGA8RI6L899 631 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 CST4P01036 141 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 PPBPP02775 128 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 TRGC1P0CF51 173 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 CFL1P23528 166 aaKnown RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 RPL28P46779 137 aaKnown RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 ETV1P50549 477 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 RAB8AP61006 207 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 AKR1C1Q04828 323 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 TEX36Q5VZQ5 186 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 SPATA8Q6RVD6 105 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 C1orf174Q8IYL3 243 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 ST13P4Q8IZP2 240 aaPredicted RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 C12orf29Q8N999 325 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 RNASE6Q93091 150 aaKnown RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 C12orf43Q96C57 262 aaKnown RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 LRRC39Q96DD0 335 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 SMIM12Q96EX1 92 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 TRABDQ9H4I3 376 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 RBM7Q9Y580 266 aaKnown RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 PCDH15Q96QU1 1955 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 PCLOQ9Y6V0 5065 aa0.11□□□□□ -2.39
SCN1A-208ENST00000625916 EIF4G1Q04637 1599 aaKnown RBP0.11□□□□□ -2.39
SCN1A-208ENST00000625916 SCAF11Q99590 1463 aaKnown RBP0.1□□□□□ -2.39
SCN1A-208ENST00000625916 KIAA0232Q92628 1395 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 RYR1P21817 5038 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 DSCAMO60469 2012 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 IGKV1D-42A0A075B6H8 117 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 OR6C6A6NF89 314 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 M0R381 172 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 ITGB1BP1O14713 200 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 ATP8B1O43520 1251 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 SGCEO43556 437 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 TNFAIP8O95379 198 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 MT-CO2P00403 227 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 UBBP0CG47 229 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM33P57088 247 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 RAB14P61106 215 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 XIAPP98170 497 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 TMEM267Q0VDI3 215 aaPredicted RBP0.1□□□□□ -2.39
SCN1A-208ENST00000625916 LCN8Q6JVE9 175 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 RPP25LQ8N5L8 163 aaKnown RBP0.1□□□□□ -2.39
SCN1A-208ENST00000625916 ZNF565Q8N9K5 539 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 C9orf163Q8N9P6 203 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 Q8WTZ3 238 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 FAM210AQ96ND0 272 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 SERPINI1Q99574 410 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 CHST6Q9GZX3 395 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 NAT8Q9UHE5 227 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 MRM2Q9UI43 246 aaKnown RBP0.1□□□□□ -2.39
SCN1A-208ENST00000625916 ENPP5Q9UJA9 477 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 NUP160Q12769 1436 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 SETD5Q9C0A6 1442 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 GLI3P10071 1580 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 PTPRBP23467 1997 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 NAV1Q8NEY1 1877 aa0.1□□□□□ -2.39
SCN1A-208ENST00000625916 BAZ2BQ9UIF8 2168 aaKnown RBP0.09□□□□□ -2.39
SCN1A-208ENST00000625916 CUL9Q8IWT3 2517 aa0.09□□□□□ -2.39
SCN1A-208ENST00000625916 TRBV6-7A0A0A0MS04 114 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 OR51F1A6NGY5 319 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 GOLGA6L10A6NI86 522 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 SDCBPO00560 298 aaPredicted RBP0.09□□□□□ -2.4
SCN1A-208ENST00000625916 MPZL2O60487 215 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 NUP62P37198 522 aaPredicted RBP0.09□□□□□ -2.4
SCN1A-208ENST00000625916 DLX6P56179 175 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 SNAP25P60880 206 aa0.09□□□□□ -2.4
SCN1A-208ENST00000625916 OR4D1Q15615 310 aa0.09□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms