RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RLN1P04808 185 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 CTSDP07339 412 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-211ENST00000618700 RRASP10301 218 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 PI3P19957 117 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 IFITM3Q01628 133 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 CATR1Q13166 79 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 HNF4GQ14541 408 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 OR8H1Q8NGG4 311 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 RITA1Q96K30 269 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 PLSCR3Q9NRY6 295 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 TBC1D24Q9ULP9 559 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 MOB4Q9Y3A3 225 aa15.72■□□□□ 0.11
UPF3A-211ENST00000618700 CENPXA8MT69 81 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 LYRM1O43325 122 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 KIR2DS2P43631 304 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 OR4C13Q8NGP0 309 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 OR51H1Q8NH63 302 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 TSC22D3Q99576 134 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 RNF5Q99942 180 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 SLC25A21Q9BQT8 299 aaPredicted RBP15.71■□□□□ 0.11
UPF3A-211ENST00000618700 RTBDNQ9BSG5 229 aaPredicted RBP15.71■□□□□ 0.11
UPF3A-211ENST00000618700 C5orf66Q9H5L9 145 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 VSIG4Q9Y279 399 aa15.71■□□□□ 0.11
UPF3A-211ENST00000618700 RNF212BA8MTL3 300 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 RBFOX2O43251 390 aaKnown RBP eCLIP15.7■□□□□ 0.1
UPF3A-211ENST00000618700 AMY1AP04745 511 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 S100GP29377 79 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 CCR6P51684 374 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 PIGPP57054 158 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 ASAH1Q13510 395 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 TMEM177Q53S58 311 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 OR2B11Q5JQS5 317 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 DHRS7BQ6IAN0 325 aaPredicted RBP15.7■□□□□ 0.1
UPF3A-211ENST00000618700 TBC1D26Q86UD7 250 aa15.7■□□□□ 0.1
UPF3A-211ENST00000618700 FLYWCH2Q96CP2 140 aaKnown RBP15.7■□□□□ 0.1
UPF3A-211ENST00000618700 M0QZK8 103 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 FGF16O43320 207 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 FCGR3BO75015 233 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 NDUFA3O95167 84 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 CRYZL1O95825 349 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 F2RP25116 425 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 CNTFRP26992 372 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 F2RL1P55085 397 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 CBX3Q13185 183 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 RBMS2Q15434 407 aaKnown RBP15.69■□□□□ 0.1
UPF3A-211ENST00000618700 MMDQ15546 238 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 ABCA11PQ4W5N1 156 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 OXLD1Q5BKU9 147 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 SPAG16Q8N0X2 631 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 FAM71E2Q8N5Q1 922 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 C5orf56Q8N8D9 126 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 Q8N9W7 124 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 NPBQ8NG41 125 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 OR4S2Q8NH73 311 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 SCGB3A2Q96PL1 93 aa15.69■□□□□ 0.1
UPF3A-211ENST00000618700 LIN7CQ9NUP9 197 aaKnown RBP15.69■□□□□ 0.1
UPF3A-211ENST00000618700 C14orf166Q9Y224 244 aaKnown RBP15.69■□□□□ 0.1
UPF3A-211ENST00000618700 MPPED1O15442 326 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 NBR2O15453 112 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 RAMP3O60896 148 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 VSIG10L2P0DP72 767 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 C11orf88Q6PI97 169 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 TCTEX1D1Q8N7M0 179 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 CCDC71LQ8N9Z2 235 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 OSR1Q8TAX0 266 aaPredicted RBP15.68■□□□□ 0.1
UPF3A-211ENST00000618700 TMEM230Q96A57 120 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 HARBI1Q96MB7 349 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 NPFFR1Q9GZQ6 430 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 RANBP3Q9H6Z4 567 aaPredicted RBP15.68■□□□□ 0.1
UPF3A-211ENST00000618700 C1RLQ9NZP8 487 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 COPZ2Q9P299 210 aa15.68■□□□□ 0.1
UPF3A-211ENST00000618700 FBN1P35555 2871 aaKnown RBP15.67■□□□□ 0.1
UPF3A-211ENST00000618700 NDUFB6O95139 128 aa15.67■□□□□ 0.1
UPF3A-211ENST00000618700 SPDEFO95238 335 aa15.67■□□□□ 0.1
UPF3A-211ENST00000618700 IGLV2-23P01705 113 aa15.67■□□□□ 0.1
UPF3A-211ENST00000618700 LGALS7P47929 136 aa15.67■□□□□ 0.1
UPF3A-211ENST00000618700 RPS16P62249 146 aaKnown RBP15.67■□□□□ 0.1
UPF3A-211ENST00000618700 KRTAP24-1Q3LI83 254 aa15.67■□□□□ 0.1
UPF3A-211ENST00000618700 CD300LFQ8TDQ1 290 aa15.67■□□□□ 0.1
UPF3A-211ENST00000618700 TSNAXQ99598 290 aaKnown RBP15.67■□□□□ 0.1
UPF3A-211ENST00000618700 FAM212BQ9NTI7 297 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-211ENST00000618700 NCBP2LA6PVI3 153 aaKnown RBP15.66■□□□□ 0.1
UPF3A-211ENST00000618700 SRRM4A7MD48 611 aaKnown RBP15.66■□□□□ 0.1
UPF3A-211ENST00000618700 H0Y980 276 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 RRHO14718 337 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 SHOXO15266 292 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 PEX14O75381 377 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 SLC6A1P30531 599 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 PSG5Q15238 335 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 C5orf64Q2M2E5 130 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 ZNF585BQ52M93 769 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 TREML4Q6UXN2 200 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-211ENST00000618700 POC5Q8NA72 575 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 TAF15Q92804 592 aaKnown RBP eCLIP15.66■□□□□ 0.1
UPF3A-211ENST00000618700 MDFIQ99750 246 aa15.66■□□□□ 0.1
UPF3A-211ENST00000618700 CRYM-AS1A6NIL9 109 aa15.65■□□□□ 0.1
UPF3A-211ENST00000618700 TSPAN9O75954 239 aa15.65■□□□□ 0.1
UPF3A-211ENST00000618700 NDUFA7O95182 113 aa15.65■□□□□ 0.1
UPF3A-211ENST00000618700 CRYBA1P05813 215 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms