RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PPIFP30405 207 aaKnown RBP12.48□□□□□ -0.41
BRCA1-228ENST00000618469 FCGR2CP31995 323 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 ALDH3B2P48448 385 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 RORCP51449 518 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 CRIP2P52943 208 aaPredicted RBP12.48□□□□□ -0.41
BRCA1-228ENST00000618469 GNB1P62873 340 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 OR2B11Q5JQS5 317 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 TMEM65Q6PI78 240 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 MRPL41Q8IXM3 137 aaKnown RBP12.48□□□□□ -0.41
BRCA1-228ENST00000618469 GRPEL2Q8TAA5 225 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 ACOT12Q8WYK0 555 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 ARPC1AQ92747 370 aa12.48□□□□□ -0.41
BRCA1-228ENST00000618469 FOXA2Q9Y261 457 aaPredicted RBP12.48□□□□□ -0.41
BRCA1-228ENST00000618469 HPGDSO60760 199 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 FCGR3BO75015 233 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 PPYP01298 95 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 IGLV1-40P01703 118 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 IGLV2-14P01704 120 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 APOA1P02647 267 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 MYCNOSP40205 109 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 CDX1P47902 265 aaPredicted RBP12.47□□□□□ -0.41
BRCA1-228ENST00000618469 LGALS7P47929 136 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 RAB25P57735 213 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 FXYD4P59646 89 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 CDK10Q15131 360 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 C19orf54Q5BKX5 351 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 UNQ5815/PRO19632Q6UWF5 114 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 ZNF562Q6V9R5 426 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 PPP1R27Q86WC6 154 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 TCTEX1D1Q8N7M0 179 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 MINDY2Q8NBR6 621 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 WFDC9Q8NEX5 89 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 OR5AP2Q8NGF4 316 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 MYOZ3Q8TDC0 251 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 SECTM1Q8WVN6 248 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 C4orf3Q8WVX3 66 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 AP3S1Q92572 193 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 RAX2Q96IS3 184 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 KLK15Q9H2R5 256 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 TAS2R8Q9NYW2 309 aa12.47□□□□□ -0.41
BRCA1-228ENST00000618469 MRPS7Q9Y2R9 242 aaKnown RBP12.47□□□□□ -0.41
BRCA1-228ENST00000618469 SOX15O60248 233 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 EGR2P11161 476 aaPredicted RBP12.46□□□□□ -0.41
BRCA1-228ENST00000618469 PRSS3P35030 304 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 RPL30P62888 115 aaKnown RBP12.46□□□□□ -0.41
BRCA1-228ENST00000618469 PJVKQ0ZLH3 352 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 FXYD3Q14802 87 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 VMA21Q3ZAQ7 101 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 OVCH2Q7RTZ1 564 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 TMEM17Q86X19 198 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 LFNGQ8NES3 379 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 OSR1Q8TAX0 266 aaPredicted RBP12.46□□□□□ -0.41
BRCA1-228ENST00000618469 CASTOR1Q8WTX7 329 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 TCTEX1D2Q8WW35 142 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 RCC1LQ96I51 464 aaKnown RBP12.46□□□□□ -0.41
BRCA1-228ENST00000618469 CMTM3Q96MX0 182 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 P2RX4Q99571 388 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 EHFQ9NZC4 300 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 ANAPC10Q9UM13 185 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 PRELID3BQ9Y3B1 194 aa12.46□□□□□ -0.41
BRCA1-228ENST00000618469 COL7A1Q02388 2944 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 SMIM31A0A1B0GVY4 71 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 SRRM4A7MD48 611 aaKnown RBP12.45□□□□□ -0.42
BRCA1-228ENST00000618469 FAM25AB3EWG3 89 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 FAM25CB3EWG5 89 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 FAM25GB3EWG6 89 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 CCL24O00175 119 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 ARPC1BO15143 372 aaKnown RBP12.45□□□□□ -0.42
BRCA1-228ENST00000618469 CNIH1O95406 144 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 CRYGBP07316 175 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 ELK1P19419 428 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 HERV-K104P61576 105 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 SSBP2P81877 361 aaPredicted RBP12.45□□□□□ -0.42
BRCA1-228ENST00000618469 TMEM267Q0VDI3 215 aaPredicted RBP12.45□□□□□ -0.42
BRCA1-228ENST00000618469 ACTBL2Q562R1 376 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 MZT2AQ6P582 158 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 IDO2Q6ZQW0 420 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 SNX29P2Q8IUI4 249 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 OR4S2Q8NH73 311 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 OR5B12Q96R08 314 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 GPHA2Q96T91 129 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 HSD17B10Q99714 261 aaKnown RBP12.45□□□□□ -0.42
BRCA1-228ENST00000618469 DCUN1D5Q9BTE7 237 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 SLC5A7Q9GZV3 580 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 GNB4Q9HAV0 340 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 CCL28Q9NRJ3 127 aa12.45□□□□□ -0.42
BRCA1-228ENST00000618469 TNFSF12O43508 249 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 SAA1P0DJI8 122 aaPredicted RBP12.44□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF182P17025 639 aaPredicted RBP12.44□□□□□ -0.42
BRCA1-228ENST00000618469 RAB9AP51151 201 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 TAS2R46P59540 309 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 UBE2KP61086 200 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 EIF4EBP1Q13541 118 aaPredicted RBP12.44□□□□□ -0.42
BRCA1-228ENST00000618469 CLVS1Q8IUQ0 354 aaPredicted RBP12.44□□□□□ -0.42
BRCA1-228ENST00000618469 ZNF491Q8N8L2 437 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 OR5M8Q8NGP6 311 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 OR5H2Q8NGV7 314 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 UBE2E2Q96LR5 201 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 VSIG4Q9Y279 399 aa12.44□□□□□ -0.42
BRCA1-228ENST00000618469 NUBP2Q9Y5Y2 271 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms