RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ADAP1O75689 374 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 CRYZL1O95825 349 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 IGKV1-39P01597 117 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 IGKV1D-39P04432 117 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 RRASP10301 218 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 CXCL3P19876 107 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 RAB13P51153 203 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 SSX2Q16385 188 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 DHRS7BQ6IAN0 325 aaPredicted RBP11.84□□□□□ -0.51
VRK3-212ENST00000596814 CCDC144NLQ6NUI1 221 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 MOB3BQ86TA1 216 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 PIP4P2Q8N4L2 257 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 OR5M8Q8NGP6 311 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 ZNF469Q96JG9 3925 aaPredicted RBP11.83□□□□□ -0.51
VRK3-212ENST00000596814 H7C2Y5 167 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 HPRT1P00492 218 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 IFNA21P01568 189 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 KLF17Q5JT82 389 aaPredicted RBP11.83□□□□□ -0.52
VRK3-212ENST00000596814 BRD3OSQ6XYD6 125 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 LYZL2Q7Z4W2 148 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 PDPNQ86YL7 162 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 C17orf50Q8WW18 174 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 MALSU1Q96EH3 234 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 PLEKHA2Q9HB19 425 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 WASHC3Q9Y3C0 194 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 IGHV3-72A0A0B4J1Y9 119 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 FAM25EA8MYX2 175 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 ATG12O94817 140 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 HLA-GP17693 338 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 MC5RP33032 325 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 AKR1C2P52895 323 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 GGNBP1Q5YKI7 109 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 AKAP14Q86UN6 197 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 RNASE11Q8TAA1 199 aaKnown RBP11.83□□□□□ -0.52
VRK3-212ENST00000596814 COMMD9Q9P000 198 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 TMED3Q9Y3Q3 217 aa11.83□□□□□ -0.52
VRK3-212ENST00000596814 C5orf51A6NDU8 294 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 TIMM23O14925 209 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 SIX6O95475 246 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 IGKV1-16P04430 117 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 VDAC1P21796 283 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 PAX6P26367 422 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 ARHGDIBP52566 201 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 CD83Q01151 205 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 DYNAPQ8N1N2 210 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 R3HDM4Q96D70 268 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 AJUBAQ96IF1 538 aa11.82□□□□□ -0.52
VRK3-212ENST00000596814 C13orf42A0A1B0GVH6 325 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 CD5LO43866 347 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 PFDN1O60925 122 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 CCNKO75909 580 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 IGKV1-5P01602 117 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 H2BFSP57053 126 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 KRTAP1-1Q07627 177 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 GSG1LQ6UXU4 331 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 CFHR4Q92496 578 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 FLYWCH2Q96CP2 140 aaKnown RBP11.81□□□□□ -0.52
VRK3-212ENST00000596814 RRNAD1Q96FB5 475 aaKnown RBP11.81□□□□□ -0.52
VRK3-212ENST00000596814 SEC22AQ96IW7 307 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 PDCD10Q9BUL8 212 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 ZNF436Q9C0F3 470 aaPredicted RBP11.81□□□□□ -0.52
VRK3-212ENST00000596814 CSPG4Q6UVK1 2322 aa11.81□□□□□ -0.52
VRK3-212ENST00000596814 MARCH11A6NNE9 402 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 MPTX1A8MV57 137 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 KRASP01116 189 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 NQO2P16083 231 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 G6PCP35575 357 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 ERVK-16P61578 105 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 HABP2Q14520 560 aaPredicted RBP11.8□□□□□ -0.52
VRK3-212ENST00000596814 TMEM177Q53S58 311 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 NMSQ5H8A3 153 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 OR4C13Q8NGP0 309 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 OSR1Q8TAX0 266 aaPredicted RBP11.8□□□□□ -0.52
VRK3-212ENST00000596814 NANPQ8TBE9 248 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 LSM10Q969L4 123 aaKnown RBP11.8□□□□□ -0.52
VRK3-212ENST00000596814 RBMXL1Q96E39 390 aaKnown RBP11.8□□□□□ -0.52
VRK3-212ENST00000596814 HARBI1Q96MB7 349 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 CHIAQ9BZP6 476 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 A0A0G2JRQ6 117 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 SHOXO15266 292 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 HRASP01112 189 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 FSHBP01225 129 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 GIPP09681 153 aaPredicted RBP11.8□□□□□ -0.52
VRK3-212ENST00000596814 CD1BP29016 333 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 BPIFB3P59826 476 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 DMBX1Q8NFW5 382 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 OR10C1Q96KK4 312 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 SPIN2AQ99865 258 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 SPIN2BQ9BPZ2 258 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 NEURL2Q9BR09 285 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 RANGRFQ9HD47 186 aaPredicted RBP11.8□□□□□ -0.52
VRK3-212ENST00000596814 NUP50Q9UKX7 468 aa11.8□□□□□ -0.52
VRK3-212ENST00000596814 TEX15Q9BXT5 2789 aa11.79□□□□□ -0.52
VRK3-212ENST00000596814 A0A0U1RQK1 487 aa11.79□□□□□ -0.52
VRK3-212ENST00000596814 VENTXO95231 258 aa11.79□□□□□ -0.52
VRK3-212ENST00000596814 IAH1Q2TAA2 248 aaPredicted RBP11.79□□□□□ -0.52
VRK3-212ENST00000596814 THOC7Q6I9Y2 204 aaKnown RBP11.79□□□□□ -0.52
VRK3-212ENST00000596814 SSX9Q7RTT3 188 aa11.79□□□□□ -0.52
VRK3-212ENST00000596814 H2BFWTQ7Z2G1 175 aa11.79□□□□□ -0.52
VRK3-212ENST00000596814 FAM219AQ8IW50 185 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms