RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 UPRTQ96BW1 309 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 HSD17B10Q99714 261 aaKnown RBP4.3□□□□□ -1.72
LIG3-210ENST00000588109 AGMATQ9BSE5 352 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 C5orf66Q9H5L9 145 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 YAE1D1Q9NRH1 226 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 SLC2A9Q9NRM0 540 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 DPM3Q9P2X0 92 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 GPR132Q9UNW8 380 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 KCNIP3Q9Y2W7 256 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 TBL2Q9Y4P3 447 aaKnown RBP4.3□□□□□ -1.72
LIG3-210ENST00000588109 ITPR2Q14571 2701 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 CCDC168Q8NDH2 2452 aa4.3□□□□□ -1.72
LIG3-210ENST00000588109 IGHV1-69DA0A0B4J2H0 117 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 C3orf85A0A1B0GTC6 90 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 A8MV72 311 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 ODF3BA8MYP8 253 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 H7C2Y5 167 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MPPED1O15442 326 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 TXNL1O43396 289 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 PRAF2O60831 178 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 PGLYRP1O75594 196 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 IFNA2P01563 188 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 IGLV2-14P01704 120 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 IGHV1-69P01742 117 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 HLA-AP01891 365 aaKnown RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 APOA2P02652 100 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 GAPDHP04406 335 aaKnown RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 OR4E1P0C645 316 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 IGHV4-38-2P0DP08 117 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 HNF1AP20823 631 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 SAA4P35542 130 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 SRP14P37108 136 aaKnown RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 THBS3P49746 956 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 CBX3Q13185 183 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 DIAPH2-AS1Q14236 149 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 SLC9A3R2Q15599 337 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MSMO1Q15800 293 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 SSX2Q16385 188 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MIDNQ504T8 468 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 TMEM128Q5BJH2 165 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 OR2B11Q5JQS5 317 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 TPTE2P1Q5T6R2 138 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MINOS1Q5TGZ0 78 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 RUSC1-AS1Q66K80 236 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 CCDC144NLQ6NUI1 221 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 FAM71F2Q6NXP2 309 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 BRD3OSQ6XYD6 125 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 SPNS3Q6ZMD2 512 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 GLDNQ6ZMI3 551 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 ZNF66Q6ZN08 573 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 ZNF833PQ6ZTB9 187 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 LHFPL4Q7Z7J7 247 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MOB3BQ86TA1 216 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 SLC25A42Q86VD7 318 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 LDLRAD3Q86YD5 345 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 ODF3L1Q8IXM7 274 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 DRAXINQ8NBI3 349 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 NANPQ8TBE9 248 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 CASTOR1Q8WTX7 329 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 CAPSLQ8WWF8 208 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 RTN4IP1Q8WWV3 396 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 ST8SIA2Q92186 375 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 ADTRPQ96IZ2 230 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 RTBDNQ9BSG5 229 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 MARVELD1Q9BSK0 173 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MRPL20Q9BYC9 149 aaKnown RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 KRTAP3-1Q9BYR8 98 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MS4A7Q9GZW8 240 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 NAA60Q9H7X0 242 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 GPN1Q9HCN4 374 aaPredicted RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 ASH1LQ9NR48 2969 aaKnown RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 LIN7CQ9NUP9 197 aaKnown RBP4.29□□□□□ -1.72
LIG3-210ENST00000588109 GAB2Q9UQC2 676 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 PRELID3BQ9Y3B1 194 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 FAM96BQ9Y3D0 163 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 HILPDAQ9Y5L2 63 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 MINOS1-NBL1R4GNA1 71 aa4.29□□□□□ -1.72
LIG3-210ENST00000588109 IGHV1-3A0A0C4DH29 117 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 A0A0U1RQK1 487 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 C9orf170A2RU37 121 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 CRYM-AS1A6NIL9 109 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 OOSP1A8MZH6 123 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 H0Y980 276 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SSNA1O43805 119 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 CREBL2O60519 120 aaPredicted RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 FCGR3BO75015 233 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 B3GALNT1O75752 331 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 IL5P05113 134 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 SERPINE2P07093 398 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 FBP1P09467 338 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 OR5AC1P0C628 307 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 CT45A6P0DMU7 189 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 CT45A5P0DMU8 189 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 CT45A7P0DMV0 189 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 F2RP25116 425 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 BRS3P32247 399 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 DUTP33316 252 aaKnown RBP4.28□□□□□ -1.72
LIG3-210ENST00000588109 KIR2DS2P43631 304 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 RAB13P51153 203 aa4.28□□□□□ -1.72
LIG3-210ENST00000588109 ZNF137PP52743 207 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms