RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 IFNA5P01569 189 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 IGHV3-7P01780 117 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 DANCRP0C864 163 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 IAPPP10997 89 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 F2RL1P55085 397 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 TAGLNQ01995 201 aaKnown RBP11.66□□□□□ -0.54
LIG3-205ENST00000585941 DHRS7BQ6IAN0 325 aaPredicted RBP11.66□□□□□ -0.54
LIG3-205ENST00000585941 ITLN2Q8WWU7 325 aaPredicted RBP11.66□□□□□ -0.54
LIG3-205ENST00000585941 AIFM2Q9BRQ8 373 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 CTSZQ9UBR2 303 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 A0A1W2PPH5 198 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 RBMXL2O75526 392 aaKnown RBP11.65□□□□□ -0.54
LIG3-205ENST00000585941 IGHV2-70P01814 119 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 GNLYP22749 145 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 GNG10P50151 68 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 TMEM155Q4W5P6 130 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 PXDC1Q5TGL8 231 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 C11orf71Q6IPW1 123 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 FAM71F2Q6NXP2 309 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 LINC00311Q8N616 119 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 TMEM217Q8N7C4 229 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 HSD17B11Q8NBQ5 300 aa11.65□□□□□ -0.54
LIG3-205ENST00000585941 TSNAXQ99598 290 aaKnown RBP11.65□□□□□ -0.54
LIG3-205ENST00000585941 RALYQ9UKM9 306 aaKnown RBP11.65□□□□□ -0.54
LIG3-205ENST00000585941 FCN3O75636 299 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 MMP23AO75900 390 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 HRASP01112 189 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 PJVKQ0ZLH3 352 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 RTL8BQ17RB0 113 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 DTX2Q86UW9 622 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 OR52E5Q8NH55 327 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 OR4A16Q8NH70 328 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 ZNF596Q8TC21 504 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 TIMD4Q96H15 378 aa11.65□□□□□ -0.55
LIG3-205ENST00000585941 SPTBN1Q01082 2364 aaKnown RBP11.64□□□□□ -0.55
LIG3-205ENST00000585941 DOCK11Q5JSL3 2073 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 A0A087X0M5 115 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 A0A1B0GX30 115 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 A0A1W2PPE3 182 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 H3BP45 60 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 CCL3L1P16619 93 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 COL8A2P25067 703 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 ATP6V0CP27449 155 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 LINC00205P59089 165 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 SPCS3P61009 180 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 TMEM267Q0VDI3 215 aaPredicted RBP11.64□□□□□ -0.55
LIG3-205ENST00000585941 POU2AF1Q16633 256 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 SPANXN5Q5MJ07 72 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 TMEM14EPQ6UXP3 125 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 ZNF833PQ6ZTB9 187 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 COMMD1Q8N668 190 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 LYPD6BQ8NI32 183 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 DTD1Q8TEA8 209 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 RAB1CQ92928 201 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 CLCC1Q96S66 551 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 PARD6GQ9BYG4 376 aaPredicted RBP11.64□□□□□ -0.55
LIG3-205ENST00000585941 MIOXQ9UGB7 285 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 NBEAQ8NFP9 2946 aa11.64□□□□□ -0.55
LIG3-205ENST00000585941 RBP4P02753 201 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 OR8U8P0C7N1 319 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 METTL15P1P0C7V9 234 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 CAMLGP49069 296 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 DLX6P56179 175 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 RPP30P78346 268 aaKnown RBP11.63□□□□□ -0.55
LIG3-205ENST00000585941 ATP6V1FQ16864 119 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 PDLIM3Q53GG5 364 aaPredicted RBP11.63□□□□□ -0.55
LIG3-205ENST00000585941 UTF1Q5T230 341 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 SLC25A24Q6NUK1 477 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 BTNL8Q6UX41 500 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 Q6ZRG5 221 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 ZNF429Q86V71 674 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 ZNF383Q8NA42 475 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 HRH4Q9H3N8 390 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 KALRNO60229 2985 aa11.63□□□□□ -0.55
LIG3-205ENST00000585941 CEBPZOSA8MTT3 80 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 CRYZL1O95825 349 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 PRH1P02810 166 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 UQCRFS1P47985 274 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 C1orf229Q6ZS94 237 aaPredicted RBP11.62□□□□□ -0.55
LIG3-205ENST00000585941 LILRB2Q8N423 598 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 OR2G3Q8NGZ4 309 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 SCGB1C1Q8TD33 95 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 TNFRSF14Q92956 283 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 TMEM186Q96B77 213 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 SH3BGRL3Q9H299 93 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 TMEM140Q9NV12 185 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 PLA2G2EQ9NZK7 142 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 IFNA17P01571 189 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 APOA2P02652 100 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 OR9G9P0C7N8 305 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 DPPA3Q6W0C5 159 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 ZNF525Q8N782 197 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 OR8B3Q8NGG8 313 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 OR10X1Q8NGY0 326 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 OR9G1Q8NH87 305 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 PINX1Q96BK5 328 aaKnown RBP11.62□□□□□ -0.55
LIG3-205ENST00000585941 NEIL1Q96FI4 390 aaPredicted RBP11.62□□□□□ -0.55
LIG3-205ENST00000585941 RHOVQ96L33 236 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 LINC00052Q96N35 136 aa11.62□□□□□ -0.55
LIG3-205ENST00000585941 OR8B2Q96RD0 313 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms