RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 TLN2Q9Y4G6 2542 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 IGHV3OR16-10A0A075B7F0 116 aa13□□□□□ -0.33
SS18-211ENST00000578954 A8MV72 311 aaPredicted RBP13□□□□□ -0.33
SS18-211ENST00000578954 HPRT1P00492 218 aa13□□□□□ -0.33
SS18-211ENST00000578954 SERPINE2P07093 398 aa13□□□□□ -0.33
SS18-211ENST00000578954 TRAPPC2P0DI81 140 aa13□□□□□ -0.33
SS18-211ENST00000578954 TRAPPC2BP0DI82 140 aa13□□□□□ -0.33
SS18-211ENST00000578954 HLA-GP17693 338 aa13□□□□□ -0.33
SS18-211ENST00000578954 CD1BP29016 333 aa13□□□□□ -0.33
SS18-211ENST00000578954 LPAR6P43657 344 aa13□□□□□ -0.33
SS18-211ENST00000578954 RAB13P51153 203 aa13□□□□□ -0.33
SS18-211ENST00000578954 RRAS2P62070 204 aaPredicted RBP13□□□□□ -0.33
SS18-211ENST00000578954 SSX2Q16385 188 aa13□□□□□ -0.33
SS18-211ENST00000578954 RTL8BQ17RB0 113 aa13□□□□□ -0.33
SS18-211ENST00000578954 TMEM177Q53S58 311 aa13□□□□□ -0.33
SS18-211ENST00000578954 OR2B11Q5JQS5 317 aa13□□□□□ -0.33
SS18-211ENST00000578954 BRD3OSQ6XYD6 125 aa13□□□□□ -0.33
SS18-211ENST00000578954 SELENOHQ8IZQ5 122 aaKnown RBP13□□□□□ -0.33
SS18-211ENST00000578954 RBPMSQ93062 196 aaKnown RBP13□□□□□ -0.33
SS18-211ENST00000578954 COMMD9Q9P000 198 aa13□□□□□ -0.33
SS18-211ENST00000578954 WASHC3Q9Y3C0 194 aa13□□□□□ -0.33
SS18-211ENST00000578954 HILPDAQ9Y5L2 63 aa13□□□□□ -0.33
SS18-211ENST00000578954 TEX15Q9BXT5 2789 aa13□□□□□ -0.33
SS18-211ENST00000578954 FAM90A9PA6NNJ1 464 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 TIMM23O14925 209 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 SSNA1O43805 119 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 S1PR2O95136 353 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 SULT1A3P0DMM9 295 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 SULT1A4P0DMN0 295 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 BCAP31P51572 246 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 DYNLT3P51808 116 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 POU2AF1Q16633 256 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 TUSC1Q2TAM9 212 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 TMEM268Q5VZI3 342 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 MOB3BQ86TA1 216 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 OSR1Q8TAX0 266 aaPredicted RBP12.99□□□□□ -0.33
SS18-211ENST00000578954 MED28Q9H204 178 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 RAB18Q9NP72 206 aa12.99□□□□□ -0.33
SS18-211ENST00000578954 A0A0U1RQK1 487 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 CYSRT1A8MQ03 144 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 VGLL3A8MV65 326 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 CRYZL1O95825 349 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 IGKV1-16P04430 117 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 ARHGDIBP52566 201 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 EBI3Q14213 229 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 LIN54Q6MZP7 749 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 ZNF695Q8IW36 515 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 SLC35G3Q8N808 338 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 SEC22AQ96IW7 307 aa12.98□□□□□ -0.33
SS18-211ENST00000578954 NAV3Q8IVL0 2385 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 hCG_2014768A0A024R1R8 64 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 HMX3A6NHT5 357 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 ATG12O94817 140 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 VENTXO95231 258 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 IGKV1-5P01602 117 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 FBP1P09467 338 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 P0C879 139 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 CD99P14209 185 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 VDAC1P21796 283 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 FCN2Q15485 313 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 AANATQ16613 207 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 C2orf68Q2NKX9 166 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 NMSQ5H8A3 153 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 THNSL2Q86YJ6 484 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 OR11H7Q8NGC8 314 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 OR4C13Q8NGP0 309 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 OR5M8Q8NGP6 311 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 LSM10Q969L4 123 aaKnown RBP12.97□□□□□ -0.33
SS18-211ENST00000578954 FLYWCH2Q96CP2 140 aaKnown RBP12.97□□□□□ -0.33
SS18-211ENST00000578954 RNF5Q99942 180 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 YAE1D1Q9NRH1 226 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 TMED3Q9Y3Q3 217 aa12.97□□□□□ -0.33
SS18-211ENST00000578954 SETXQ7Z333 2677 aaKnown RBP12.96□□□□□ -0.33
SS18-211ENST00000578954 IGHV3-72A0A0B4J1Y9 119 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 H7C2Y5 167 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 NQO2P16083 231 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 PAX6P26367 422 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 FAM120AOSQ5T036 256 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 GGNBP1Q5YKI7 109 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 LYZL2Q7Z4W2 148 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 FAM219AQ8IW50 185 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 PRDM13Q9H4Q3 707 aa12.96□□□□□ -0.33
SS18-211ENST00000578954 A0A0G2JRQ6 117 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 MARCH11A6NNE9 402 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 ADAP1O75689 374 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 LY6G6DO95868 133 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 HRASP01112 189 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 IGLV2-23P01705 113 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 IL6RP08887 468 aaPredicted RBP12.95□□□□□ -0.34
SS18-211ENST00000578954 BRS3P32247 399 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 LGALS7P47929 136 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 SRSF4Q08170 494 aaKnown RBP12.95□□□□□ -0.34
SS18-211ENST00000578954 Q8N6K4 173 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 UXS1Q8NBZ7 420 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 R3HDM4Q96D70 268 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 HARBI1Q96MB7 349 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 AIFM2Q9BRQ8 373 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 MS4A7Q9GZW8 240 aaPredicted RBP12.95□□□□□ -0.34
SS18-211ENST00000578954 MGAT4CQ9UBM8 478 aa12.95□□□□□ -0.34
SS18-211ENST00000578954 MMP24Q9Y5R2 645 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms