RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RBMY1CP0DJD4 496 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 OR13C7P0DN81 318 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 CD99P14209 185 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 GABRG2P18507 467 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 OMGP23515 440 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 CXCR1P25024 350 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 AK4P27144 223 aaPredicted RBP3.16□□□□□ -1.9
NUP88-213ENST00000576862 GRPRP30550 384 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 OR1E2P47887 323 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 LINC00315P59091 139 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 RAB5BP61020 215 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 TBPL1P62380 186 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 RPL38P63173 70 aaKnown RBP3.16□□□□□ -1.9
NUP88-213ENST00000576862 RPS21P63220 83 aaKnown RBP3.16□□□□□ -1.9
NUP88-213ENST00000576862 RSU1Q15404 277 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 ATP6AP1LQ52LC2 224 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 TRMT12Q53H54 448 aaKnown RBP3.16□□□□□ -1.9
NUP88-213ENST00000576862 TMEM128Q5BJH2 165 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 FBXW9Q5XUX1 488 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 ACP7Q6ZNF0 438 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 FAM231DQ6ZW35 169 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 MSRB3Q8IXL7 192 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 SMIM20Q8N5G0 67 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 EIF4E3Q8N5X7 224 aaKnown RBP3.16□□□□□ -1.9
NUP88-213ENST00000576862 Q8N9W7 124 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 OR5AR1Q8NGP9 310 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 OR2A1Q8NGT9 310 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 OR13C6PQ8NH95 151 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 MCFD2Q8NI22 146 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 ABHD3Q8WU67 409 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 EXOSC8Q96B26 276 aaKnown RBP3.16□□□□□ -1.9
NUP88-213ENST00000576862 PPP3R2Q96LZ3 170 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 FOPNLQ96NB1 174 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 SLC17A9Q9BYT1 436 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 DCSTAMPQ9H295 470 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 VSIRQ9H7M9 311 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 EFCAB1Q9HAE3 211 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 LRTM1Q9HBL6 345 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 WFDC1Q9HC57 220 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 DOK5Q9P104 306 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 MMP17Q9ULZ9 603 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 ANAPC1Q9H1A4 1944 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 BRWD1Q9NSI6 2320 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 ARHGAP21Q5T5U3 1957 aa3.16□□□□□ -1.9
NUP88-213ENST00000576862 MYLKQ15746 1914 aa3.15□□□□□ -1.9
NUP88-213ENST00000576862 IGHV3OR16-13A0A075B7E8 117 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 IGKV1D-8A0A087WSZ0 117 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 IGHV2OR16-5A0A0B4J2B6 119 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 C9orf170A2RU37 121 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 MFNGO00587 321 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ICOSLGO75144 302 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 RDH16O75452 317 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ATG12O94817 140 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 IFNA4P05014 189 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 S100A8P05109 93 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 SULT1A3P0DMM9 295 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 SULT1A4P0DMN0 295 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ERGP11308 486 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 UBE2E1P51965 193 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 POLR2JP52435 117 aaKnown RBP3.15□□□□□ -1.91
NUP88-213ENST00000576862 RPS20P60866 119 aaKnown RBP3.15□□□□□ -1.91
NUP88-213ENST00000576862 BAXQ07812 192 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ZNF763Q0D2J5 394 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 PPP1R1AQ13522 171 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ARFRP1Q13795 201 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 CLINT1Q14677 625 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ZNF726P1Q15940 193 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 TMEM78Q5T7P6 136 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 SYT6Q5T7P8 510 aaPredicted RBP3.15□□□□□ -1.91
NUP88-213ENST00000576862 TEX36Q5VZQ5 186 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 NOXRED1Q6NXP6 359 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 LPCAT3Q6P1A2 487 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 OPN5Q6U736 354 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ZNF429Q86V71 674 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ZNF439Q8NDP4 499 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 OR10G9Q8NGN4 311 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 GRPEL2Q8TAA5 225 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ROPN1LQ96C74 230 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 LRRC58Q96CX6 371 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 CMTM7Q96FZ5 175 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 RNF185Q96GF1 192 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 FCRL1Q96LA6 429 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 UBE2E2Q96LR5 201 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 OR2M4Q96R27 311 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 SERPINI1Q99574 410 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 CDX2Q99626 313 aaPredicted RBP3.15□□□□□ -1.91
NUP88-213ENST00000576862 CMSS1Q9BQ75 279 aaKnown RBP3.15□□□□□ -1.91
NUP88-213ENST00000576862 GGACTQ9BVM4 153 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 EBPLQ9BY08 206 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 ABCG5Q9H222 651 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 SLC25A22Q9H936 323 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 TAC3Q9UHF0 121 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 JPT1Q9UK76 154 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 RAB22AQ9UL26 194 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 OBSL1O75147 1896 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 DOCK6Q96HP0 2047 aa3.15□□□□□ -1.91
NUP88-213ENST00000576862 SHROOM3Q8TF72 1996 aa3.14□□□□□ -1.91
NUP88-213ENST00000576862 IGKV1-8A0A0C4DH67 115 aa3.14□□□□□ -1.91
NUP88-213ENST00000576862 FAM240AA0A1B0GVK7 77 aa3.14□□□□□ -1.91
NUP88-213ENST00000576862 TCRBV3S1A0A5B6 114 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms