RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 hCG_1809904A0A1W2PP81 198 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 A0A1W2PR64 198 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 A0A1W2PRV1 198 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 MARCH11A6NNE9 402 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 YPEL1O60688 119 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 IFNA4P05014 189 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 BCL2P10415 239 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 DUTP33316 252 aaKnown RBP8.38□□□□□ -1.07
VPS53-220ENST00000576149 GPR12P47775 334 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 TCF15Q12870 199 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 LTC4SQ16873 150 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 SAPCD1Q5SSQ6 148 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 NCR3LG1Q68D85 454 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 MOGAT3Q86VF5 341 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 RBMXL3Q8N7X1 1067 aaKnown RBP8.38□□□□□ -1.07
VPS53-220ENST00000576149 ZDHHC16Q969W1 377 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 YPEL2Q96QA6 119 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 TMEM147Q9BVK8 224 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 A4D1N5 150 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 ZFP92A6NM28 416 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 CRYABP02511 175 aaKnown RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 LOXL3P58215 753 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 DLK1P80370 383 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 SLC35E3Q7Z769 313 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 ZNRF1Q8ND25 227 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 OR10P1Q8NGE3 313 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 GPR61Q9BZJ8 451 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 GNG12Q9UBI6 72 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 CHD3Q12873 2000 aaKnown RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 CFAP47Q6ZTR5 3102 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 C5orf52A6NGY3 159 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 K7EM74 188 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 F2RL2O00254 374 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 TM4SF5O14894 197 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 SPRY3O43610 288 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 GATCO43716 136 aaKnown RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 RBMXL2O75526 392 aaKnown RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 TNFSF4P23510 183 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 CEACAM8P31997 349 aaPredicted RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 FGF8P55075 233 aaPredicted RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 ELLP55199 621 aaPredicted RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 SNRPEP62304 92 aaKnown RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 PMS2P11Q13670 270 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 FAM90A2PQ658T7 463 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 VHLLQ6RSH7 139 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 RPP25LQ8N5L8 163 aaKnown RBP8.37□□□□□ -1.07
VPS53-220ENST00000576149 R3HDM4Q96D70 268 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 SPXQ9BT56 116 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 SFXN3Q9BWM7 321 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 RNF24Q9Y225 148 aa8.37□□□□□ -1.07
VPS53-220ENST00000576149 PRRC2CQ9Y520 2896 aaKnown RBP8.36□□□□□ -1.07
VPS53-220ENST00000576149 MAP1LC3B2A6NCE7 125 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 CEBPZOSA8MTT3 80 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 ZNF727A8MUV8 499 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 IGKV1D-33P01593 117 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 IGKV1-33P01594 117 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 G0S2P27469 103 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 PRRX1P54821 245 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 RAB11AP62491 216 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 VWC2Q2TAL6 325 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 ADAM5Q6NVV9 412 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 HEPN1Q6WQI6 88 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 MRGPRGQ86SM5 289 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 CA5BP1Q8WTZ4 195 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 ITLN1Q8WWA0 313 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 PLPPR2Q96GM1 343 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 P2RX4Q99571 388 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 MAP1LC3BQ9GZQ8 125 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 CACNA1DQ01668 2161 aa8.36□□□□□ -1.07
VPS53-220ENST00000576149 HEATR1Q9H583 2144 aaKnown RBP8.36□□□□□ -1.07
VPS53-220ENST00000576149 USF3Q68DE3 2245 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 ZNF98A6NK75 572 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 FAM90A9PA6NNJ1 464 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 FCGR3BO75015 233 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 HPRT1P00492 218 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 OR9G9P0C7N8 305 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 CGB3P0DN86 165 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 CGB7P0DN87 165 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 GATA4P43694 442 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 ZNF134P52741 427 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 GNB2P62879 340 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 ACSM6Q6P461 480 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 QTRT1Q9BXR0 403 aaKnown RBP8.35□□□□□ -1.07
VPS53-220ENST00000576149 SLC39A9Q9NUM3 307 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 VAX2Q9UIW0 290 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 A0A1W2PPE3 182 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 A8MXE2 369 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 KLK10O43240 276 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 RBFOX2O43251 390 aaKnown RBP eCLIP8.35□□□□□ -1.078e-7■■□□□ 13.4
VPS53-220ENST00000576149 STAG3L3P0CL85 134 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 MDKP21741 143 aaPredicted RBP8.35□□□□□ -1.07
VPS53-220ENST00000576149 FGF7P21781 194 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 EDDM3BP56851 147 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 SPINK9Q5DT21 86 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 C1QL4Q86Z23 238 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 FAM57AQ8TBR7 257 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 FAM222BQ8WU58 562 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 LHX4Q969G2 390 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 IFI27L2Q9H2X8 130 aa8.35□□□□□ -1.07
VPS53-220ENST00000576149 SIRT7Q9NRC8 400 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms