RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GATD1Q8NB37 220 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 OR52E4Q8NGH9 312 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 DCAKDQ8WVC6 231 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SRSF12Q8WXF0 261 aaKnown RBP4.07□□□□□ -1.76
VPS53-219ENST00000576019 DOK1Q99704 481 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SLC25A31Q9H0C2 315 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 DMAC2Q9NW81 257 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 PRO0628Q9UI54 55 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 DOCK4Q8N1I0 1966 aa4.07□□□□□ -1.76
VPS53-219ENST00000576019 SRRM2Q9UQ35 2752 aaKnown RBP4.07□□□□□ -1.76
VPS53-219ENST00000576019 TGIF2-C20orf24A0A0A6YYL0 155 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 IGHV6-1A0A0B4J1U7 121 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 KLF18A0A0U1RQI7 1052 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 ZNF705GA8MUZ8 300 aaPredicted RBP4.06□□□□□ -1.76
VPS53-219ENST00000576019 KRTAP29-1A8MX34 341 aaPredicted RBP4.06□□□□□ -1.76
VPS53-219ENST00000576019 E7EQ34 232 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 CCDC22O60826 627 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 DCTN3O75935 186 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 TNNC2P02585 160 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 SOD3P08294 240 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 HIST1H1EP10412 219 aaKnown RBP4.06□□□□□ -1.76
VPS53-219ENST00000576019 COX6A1P12074 109 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 ZNF17P17021 662 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 CXCL5P42830 114 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 ZNF136P52737 540 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 SLC18A1P54219 525 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 ARF6P62330 175 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 RANP62826 216 aaKnown RBP4.06□□□□□ -1.76
VPS53-219ENST00000576019 ADIGQ0VDE8 80 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 AKIRIN2Q53H80 203 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 TMEM255AQ5JRV8 349 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 FAAP20Q6NZ36 180 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 COMMD7Q86VX2 200 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 ZNF440Q8IYI8 595 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 DRAM1Q8N682 238 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 LINC00337Q8N6G1 96 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 ZNF645Q8N7E2 425 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 C12orf29Q8N999 325 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 OR4P4Q8NGL7 312 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 OR52P1PQ8NH57 321 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 TYMSOSQ8TAI1 123 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 C10orf105Q8TEF2 133 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 C16orf74Q96GX8 76 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 OR10C1Q96KK4 312 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 OR2M2Q96R28 347 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 OR4K3Q96R72 315 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 HSD17B10Q99714 261 aaKnown RBP4.06□□□□□ -1.76
VPS53-219ENST00000576019 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.06□□□□□ -1.76
VPS53-219ENST00000576019 RBM12B-AS1Q9P1G2 102 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 OPN4Q9UHM6 478 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 FREM3P0C091 2139 aa4.06□□□□□ -1.76
VPS53-219ENST00000576019 C5orf63A6NC05 138 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 EEF1E1-BLOC1S5C9J1V9 151 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 EEF1E1O43324 174 aaKnown RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 TRAF3IP2O43734 574 aaPredicted RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 MRPL3P09001 348 aaKnown RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 CRISP2P16562 243 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 OMPP47874 163 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 IDH3GP51553 393 aaPredicted RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 RAB25P57735 213 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 POLR2GP62487 172 aaKnown RBP eCLIP4.05□□□□□ -1.76
VPS53-219ENST00000576019 GRB2P62993 217 aaKnown RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 TAF9Q16594 264 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 RSPO1Q2MKA7 263 aaPredicted RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 HIGD2BQ4VC39 106 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 SPIN3Q5JUX0 258 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 TSPO2Q5TGU0 170 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 IL34Q6ZMJ4 242 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 CCDC121Q6ZUS5 278 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 CAMK2N1Q7Z7J9 78 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 PRNTQ86SH4 94 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 CALHM1Q8IU99 346 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 OR1M1Q8NGA1 313 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 ABHD3Q8WU67 409 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 RDH5Q92781 318 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 TIPINQ9BVW5 301 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 CDC42EP4Q9H3Q1 356 aaKnown RBP4.05□□□□□ -1.76
VPS53-219ENST00000576019 VSIRQ9H7M9 311 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 FKBP14Q9NWM8 211 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 ZNF337Q9Y3M9 751 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 EXPH5Q8NEV8 1989 aa4.05□□□□□ -1.76
VPS53-219ENST00000576019 KRBOX1C9JBD0 128 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 C8orf87E5RJ46 101 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 KCNK1O00180 336 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 MFNGO00587 321 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 PDCD6O75340 191 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 EPPINO95925 133 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 SERPINA1P01009 418 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 INSP01308 110 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 GABRA1P14867 456 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 AKR1C4P17516 323 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 KIR3DL2P43630 455 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 SLCO1A2P46721 670 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 NMUP48645 174 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 OR4D2P58180 307 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 CDK5Q00535 292 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 FMODQ06828 376 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 Q499Y3 187 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 DEFB121Q5J5C9 76 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 ZFAND6Q6FIF0 208 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms