RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NF1P21359 2839 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 M0QZK8 103 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 CHST1O43916 411 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 FCGR3BO75015 233 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 IGKV1-16P04430 117 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 CCR6P51684 374 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 DEFA1P59665 94 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 DEFA3P59666 94 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 IFITM3Q01628 133 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 HNF4GQ14541 408 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 TBC1D26Q86UD7 250 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 C5orf66Q9H5L9 145 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 C1RLQ9NZP8 487 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 ZFHX3Q15911 3703 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 CUBNO60494 3623 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 NDUFB6O95139 128 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 F2RP25116 425 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 TMEM177Q53S58 311 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 SPAG16Q8N0X2 631 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 OSR1Q8TAX0 266 aaPredicted RBP13.65□□□□□ -0.22
NUP88-210ENST00000574867 RTBDNQ9BSG5 229 aaPredicted RBP13.65□□□□□ -0.22
NUP88-210ENST00000574867 FAM212BQ9NTI7 297 aaPredicted RBP13.65□□□□□ -0.22
NUP88-210ENST00000574867 VSIG4Q9Y279 399 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 JMJD1CQ15652 2540 aa13.65□□□□□ -0.22
NUP88-210ENST00000574867 MPPED1O15442 326 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 FGF16O43320 207 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 B3GALNT1O75752 331 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 CRYZL1O95825 349 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 MMDQ15546 238 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 OR2B11Q5JQS5 317 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 PRIMA1Q86XR5 153 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 HARBI1Q96MB7 349 aa13.64□□□□□ -0.23
NUP88-210ENST00000574867 TSNAXQ99598 290 aaKnown RBP13.64□□□□□ -0.23
NUP88-210ENST00000574867 FAM181BA6NEQ2 426 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 SPDEFO95238 335 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 SLC6A1P30531 599 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 LGALS7P47929 136 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 RPS16P62249 146 aaKnown RBP13.63□□□□□ -0.23
NUP88-210ENST00000574867 NPFFR1Q9GZQ6 430 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 PALMDQ9NP74 551 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 SHOXO15266 292 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 NBR2O15453 112 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 CRYBA1P05813 215 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 NPBQ8NG41 125 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 KIAA1456Q9P272 454 aa13.63□□□□□ -0.23
NUP88-210ENST00000574867 NCBP2LA6PVI3 153 aaKnown RBP13.62□□□□□ -0.23
NUP88-210ENST00000574867 H0Y980 276 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 NDUFA3O95167 84 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 BRWD1-AS2P59051 145 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 RANBP3Q9H6Z4 567 aaPredicted RBP13.62□□□□□ -0.23
NUP88-210ENST00000574867 RAMP3O60896 148 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 HPRT1P00492 218 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 RIPPLY3P57055 190 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 TAS2R31P59538 309 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 CENPSQ8N2Z9 138 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 C5orf56Q8N8D9 126 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 RITA1Q96K30 269 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 NAA60Q9H7X0 242 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 PLSCR3Q9NRY6 295 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 COMMD9Q9P000 198 aa13.62□□□□□ -0.23
NUP88-210ENST00000574867 TEX13DA0A0J9YY54 714 aaPredicted RBP13.61□□□□□ -0.23
NUP88-210ENST00000574867 C3orf85A0A1B0GTC6 90 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 FAM240BA0A1B0GVZ2 78 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 CRYM-AS1A6NIL9 109 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 F2RL1P55085 397 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 C11orf88Q6PI97 169 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 TMED4Q7Z7H5 227 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 SGPP2Q8IWX5 399 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 FAM71E2Q8N5Q1 922 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 Q8N9W7 124 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 RBMXL1Q96E39 390 aaKnown RBP13.61□□□□□ -0.23
NUP88-210ENST00000574867 AIFM2Q9BRQ8 373 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 PLEKHA2Q9HB19 425 aa13.61□□□□□ -0.23
NUP88-210ENST00000574867 PEX14O75381 377 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 HRASP01112 189 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 ENKURQ8TC29 256 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 TMEM230Q96A57 120 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 RRHO14718 337 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 RPA2P15927 270 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 CNTFRP26992 372 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 UBE2MP61081 183 aaKnown RBP13.6□□□□□ -0.23
NUP88-210ENST00000574867 SRSF2Q01130 221 aaKnown RBP13.6□□□□□ -0.23
NUP88-210ENST00000574867 VMA21Q3ZAQ7 101 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 TMEM128Q5BJH2 165 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 ADAD2Q8NCV1 583 aaKnown RBP13.6□□□□□ -0.23
NUP88-210ENST00000574867 RASL11BQ9BPW5 248 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 C20orf85Q9H1P6 137 aa13.6□□□□□ -0.23
NUP88-210ENST00000574867 IGLV2-23P01705 113 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 TCRBP04435 133 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 SERPINE2P07093 398 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 VSIG10L2P0DP72 767 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 AKR1C4P17516 323 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 UBE2KP61086 200 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 PSG5Q15238 335 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 C5orf64Q2M2E5 130 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 GALNT14Q96FL9 552 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 TP53RKQ96S44 253 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 KCNIP3Q9Y2W7 256 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 C2CD3Q4AC94 2353 aa13.59□□□□□ -0.23
NUP88-210ENST00000574867 ARPC1BO15143 372 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms