RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 DICER1Q9UPY3 1922 aaKnown RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 CHD5Q8TDI0 1954 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 NUP214P35658 2090 aaPredicted RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 ANKRD12Q6UB98 2062 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 IGLV3-12A0A075B6K2 115 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 A0A1B0GV72 72 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 EXOC1LA0A1B0GW35 172 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 GNG14A0A1W2PPG7 69 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 ZNF98A6NK75 572 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 A8MUU9 505 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 C16orf90A8MZG2 172 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 H3BQ85 93 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 LST1O00453 97 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 LECT2O14960 151 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 CRYZL1O95825 349 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 IFNA1P01562 189 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 HLA-DRB1P01911 266 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 KCNE1P15382 129 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 CRABP1P29762 137 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 ZNF140P52738 457 aaPredicted RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 TAS2R41P59536 307 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 DEFA1P59665 94 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 TBPL1P62380 186 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 OR8G1Q15617 311 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 GRK1Q15835 563 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 KCNJ8Q15842 424 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 IAH1Q2TAA2 248 aaPredicted RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 MRPL51Q4U2R6 128 aaKnown RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 TMEM69Q5SWH9 247 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 LDLRAD2Q5SZI1 272 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 C10orf91Q5T1B1 145 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 GLT8D1Q68CQ7 371 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 C3orf33Q6P1S2 294 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 Q6P435 159 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 Q6ZQT7 251 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 SCXQ7RTU7 201 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 LYZL2Q7Z4W2 148 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 TAC4Q86UU9 113 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 OSR2Q8N2R0 312 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 RPRMLQ8N4K4 120 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 TBC1D19Q8N5T2 526 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 ANKRD29Q8N6D5 301 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 BPIFB6Q8NFQ5 453 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 OR13C6PQ8NH95 151 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 TEX47Q8TBZ9 253 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 CD200R1Q8TD46 325 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 KLF14Q8TD94 323 aaPredicted RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 CT55Q8WUE5 264 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 ROPN1LQ96C74 230 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 TSPAN32Q96QS1 320 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 KLF6Q99612 283 aaPredicted RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 SPIN2AQ99865 258 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 SPIN2BQ9BPZ2 258 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 KRTAP4-5Q9BYR2 181 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 KRTAP2-2Q9BYT5 123 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 NKX6-2Q9C056 277 aaPredicted RBP1.29□□□□□ -2.2
CHD3-217ENST00000574022 COMMD5Q9GZQ3 224 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 PCBD2Q9H0N5 130 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 ANAPC11Q9NYG5 84 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 TAAR3PQ9P1P4 343 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 AK3Q9UIJ7 227 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 SNX12Q9UMY4 172 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 S4R3C0 116 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 NUP155O75694 1391 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 SSH2Q76I76 1423 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 NACADO15069 1562 aa1.29□□□□□ -2.2
CHD3-217ENST00000574022 SVILO95425 2214 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 IGKV2D-24A0A075B6R9 120 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 TRAV40A0A0B4J280 105 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 A0A0J9YY10 115 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 A0A1B0GX78 115 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 A8MU10 97 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 A8MUN3 132 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 A8MWP6 167 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 PIRO00625 290 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 UBE2L6O14933 153 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 HMGB3O15347 200 aaKnown RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 ZNF324O75467 553 aaPredicted RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 SERPINE1P05121 402 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 PFN1P07737 140 aaKnown RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 INAFM2P0DMQ5 153 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 NPPCP23582 126 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 MSNP26038 577 aaKnown RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 SERPINB1P30740 379 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 CRYBA4P53673 196 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 KLF3P57682 345 aaPredicted RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 RPS20P60866 119 aaKnown RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 GNG3P63215 75 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 BIKQ13323 160 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 TSNQ15631 228 aaKnown RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 AMTNQ6UX39 209 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 C16orf47Q6ZP98 133 aaPredicted RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 Q6ZS49 121 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 TMPPEQ6ZT21 453 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 H1FOOQ8IZA3 346 aaPredicted RBP1.28□□□□□ -2.2
CHD3-217ENST00000574022 ZNF664Q8N3J9 261 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 SMIM20Q8N5G0 67 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 ZFAND2AQ8N6M9 145 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 DAND5Q8N907 189 aa1.28□□□□□ -2.2
CHD3-217ENST00000574022 GDPD1Q8N9F7 314 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms