RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 C2CD4CQ8TF44 421 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 R3HDM4Q96D70 268 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 ARV1Q9H2C2 271 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 MMP24Q9Y5R2 645 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 C5orf52A6NGY3 159 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 IFNL4K9M1U5 179 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 CRYBA1P05813 215 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 THBDP07204 575 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 OR9G9P0C7N8 305 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 TNFSF4P23510 183 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 REG1BP48304 166 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 MORN2Q502X0 79 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 PPP1R35Q8TAP8 253 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 PRR7Q8TB68 274 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 SNX22Q96L94 193 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 WFIKKN1Q96NZ8 548 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 OR4C12Q96R67 309 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 SEC11CQ9BY50 192 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 DYNLRB1Q9NP97 96 aa8.23□□□□□ -1.09
VPS53-206ENST00000570359 LYNX1G3V0Z9 82 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 PROP1O75360 226 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 LYNX1P0DP58 116 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 RAB5BP61020 215 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 RPS23P62266 143 aaKnown RBP8.22□□□□□ -1.09
VPS53-206ENST00000570359 BAXQ07812 192 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 ADIPOQQ15848 244 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 AWAT1Q58HT5 328 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 DTD1Q8TEA8 209 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 LSM10Q969L4 123 aaKnown RBP8.22□□□□□ -1.09
VPS53-206ENST00000570359 LURAP1Q96LR2 239 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 SVEP1Q4LDE5 3571 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 CSMD1Q96PZ7 3565 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 PLXNB1O43157 2135 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 ZNF729A6NN14 1252 aaPredicted RBP8.22□□□□□ -1.09
VPS53-206ENST00000570359 SOX15O60248 233 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 ARG1P05089 322 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 CD5P06127 495 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 CCL3L1P16619 93 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 TFF3Q07654 80 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 PEA15Q15121 130 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 MSMO1Q15800 293 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 SSX7Q7RTT5 188 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 ZNF525Q8N782 197 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 AGMATQ9BSE5 352 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 EGLN1Q9GZT9 426 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 SAP30LQ9HAJ7 183 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 NIT2Q9NQR4 276 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 STRAPQ9Y3F4 350 aaKnown RBP8.22□□□□□ -1.09
VPS53-206ENST00000570359 WSB1Q9Y6I7 421 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 LRRC30A6NM36 301 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 K7ENP7 123 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 PLAUP00749 431 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 EIF2S3LQ2VIR3 472 aaKnown RBP8.22□□□□□ -1.09
VPS53-206ENST00000570359 MRGPRGQ86SM5 289 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 C14orf79Q96F83 325 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 CLCC1Q96S66 551 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 SLC25A22Q9H936 323 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 RPRMQ9NS64 109 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 MIOXQ9UGB7 285 aa8.22□□□□□ -1.09
VPS53-206ENST00000570359 TET2Q6N021 2002 aaPredicted RBP8.21□□□□□ -1.09
VPS53-206ENST00000570359 IGLV3-9A0A075B6K5 115 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 TRGV10A0A0A0MS01 117 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 C1QTNF9BB2RNN3 333 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 NDUFS6O75380 124 aaKnown RBP8.21□□□□□ -1.1
VPS53-206ENST00000570359 DFFBO76075 338 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 GZMHP20718 246 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 COL8A2P25067 703 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 DUTP33316 252 aaKnown RBP8.21□□□□□ -1.1
VPS53-206ENST00000570359 TAS2R30P59541 319 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 RAB2AP61019 212 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 HBG1P69891 147 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 HBG2P69892 147 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 EDARADDQ8WWZ3 215 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 GAFA1Q96PS6 74 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 ZNF665Q9H7R5 613 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.21□□□□□ -1.1
VPS53-206ENST00000570359 TANC2Q9HCD6 1990 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 SAA2-SAA4A0A096LPE2 208 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 IFNA10P01566 189 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 SAA2P0DJI9 122 aaPredicted RBP8.21□□□□□ -1.1
VPS53-206ENST00000570359 SLC16A13Q7RTY0 426 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 OR4A16Q8NH70 328 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 Q8TCH9 128 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 GNPNAT1Q96EK6 184 aaPredicted RBP8.21□□□□□ -1.1
VPS53-206ENST00000570359 S1PR3Q99500 378 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 PBDC1Q9BVG4 233 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 GFOD1Q9NXC2 390 aa8.21□□□□□ -1.1
VPS53-206ENST00000570359 METTL1Q9UBP6 276 aaKnown RBP8.21□□□□□ -1.1
VPS53-206ENST00000570359 A0A1W2PPE2 198 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 RBFOX3A6NFN3 312 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 ARHGAP32A7KAX9 2087 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 FAM157AC9JC47 383 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 ADH4P08319 380 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 FGF7P21781 194 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 TUBG1P23258 451 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 LOXL3P58215 753 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 C17orf58Q2M2W7 97 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 CT45A1Q5HYN5 189 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 SPSB3Q6PJ21 355 aa8.2□□□□□ -1.1
VPS53-206ENST00000570359 LYPD2Q6UXB3 125 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms