RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZNF93P35789 620 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 OR1E2P47887 323 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 LHX2P50458 406 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 ZNF121P58317 390 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 SLC35B1P78383 322 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 TNFAIP6P98066 277 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 FUT5Q11128 374 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 KIAA0040Q15053 153 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 C3AR1Q16581 482 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 PRR30Q53SZ7 412 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 TCEAL5Q5H9L2 206 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 RPL7L1Q6DKI1 246 aaKnown RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 PWWP2BQ6NUJ5 590 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 C16orf82Q7Z2V1 217 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 FAM219AQ8IW50 185 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 SPEM1Q8N4L4 309 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 GCSAMQ8N6F7 178 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 KRTCAP2Q8N6L1 136 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 ZNF615Q8N8J6 731 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 CYB561D1Q8N8Q1 229 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 PRR26Q8N8Z3 221 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 OR10P1Q8NGE3 313 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 OR8B12Q8NGG6 310 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 OR52E2Q8NGJ4 325 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 OR51G1Q8NGK1 321 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 PLPPR1Q8TBJ4 325 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 FGF11Q92914 225 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 C8orf44Q96CB5 159 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 HPDLQ96IR7 371 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 AP1S3Q96PC3 154 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 MCEEQ96PE7 176 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 DERL3Q96Q80 235 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 FRG2BQ96QU4 278 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 OR2D2Q9H210 308 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 FAM124BQ9H5Z6 455 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 RERGLQ9H628 205 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 HES4Q9HCC6 221 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 SH2D2AQ9NP31 389 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 IL36GQ9NZH8 169 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 NUDT4Q9NZJ9 180 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A10Q9UBX3 287 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 KLK11Q9UBX7 282 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 ANXA10Q9UJ72 324 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 VDAC3Q9Y277 283 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 POLDIP2Q9Y2S7 368 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 KLHDC2Q9Y2U9 406 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 WASHC3Q9Y3C0 194 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 MED31Q9Y3C7 131 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 BAZ2BQ9UIF8 2168 aaKnown RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 TRAV9-2A0A087WT02 112 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 TRGV10A0A0A0MS01 117 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 TINCRA0A1B0GVN0 87 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 DUXBA0A1W2PPF3 345 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PPM0 123 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 FAM231BA6NCW3 169 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MEIS3P1A6NDR6 274 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 A8MZ25 164 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 H0YJW9 148 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 TMEM250H0YL14 139 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 H3BMH7 237 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 K7EN84 100 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PLPP3O14495 311 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 HSPB6O14558 160 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 SOCS1O15524 211 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PHF1O43189 567 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 GCM2O75603 506 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR2J3O76001 311 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 KBTBD11O94819 623 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 WISP3O95389 354 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 EML2O95834 649 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 CA1P00915 261 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 APOA2P02652 100 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MT-ATP8P03928 68 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PRSS56P0CW18 603 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 IRF1P10914 325 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ORM2P19652 201 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 NTSP30990 170 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OPRM1P35372 400 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PPP1CCP36873 323 aaKnown RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 CA7P43166 264 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 RPS28P62857 69 aaKnown RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 MEF2CQ06413 473 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 LTBQ06643 244 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 Q0VG73 95 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 CATR1Q13166 79 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ZNF146Q15072 292 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MSMO1Q15800 293 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 HLA-DRB5Q30154 266 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 POM121L1PQ3SYA9 428 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MPV17L2Q567V2 206 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 SYT14P1Q58G82 188 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 VAX1Q5SQQ9 334 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 C1orf220Q5T0J3 134 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ZNF684Q5T5D7 378 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 DCAF12Q5T6F0 453 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 STUMQ69YW2 141 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 TXNDC8Q6A555 127 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ZNF324BQ6AW86 544 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 TRNP1Q6NT89 227 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms