RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GIMAP1Q8WWP7 306 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 DDB2Q92466 427 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 RITA1Q96K30 269 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 TAS2R8Q9NYW2 309 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 RSL24D1Q9UHA3 163 aaKnown RBP10.24□□□□□ -0.77
CLK3-224ENST00000568605 CEPT1Q9Y6K0 416 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 IGHV7-81A0A0B4J1V7 117 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 LINC00473A8K010 186 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 ATP6V0E1O15342 81 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 FCGR3BO75015 233 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 PMP2P02689 132 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 TBPP20226 339 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 HLA-DMAP28067 261 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 S100GP29377 79 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 HRH1P35367 487 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 SSBP1Q04837 148 aaKnown RBP10.23□□□□□ -0.77
CLK3-224ENST00000568605 TMEM267Q0VDI3 215 aaPredicted RBP10.23□□□□□ -0.77
CLK3-224ENST00000568605 FOXE3Q13461 319 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 PPP1R27Q86WC6 154 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 OR6F1Q8NGZ6 308 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 MCFD2Q8NI22 146 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 FCAMRQ8WWV6 532 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 MOB3AQ96BX8 217 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 R3HDM4Q96D70 268 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 RBMXL1Q96E39 390 aaKnown RBP10.23□□□□□ -0.77
CLK3-224ENST00000568605 DIRAS2Q96HU8 199 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 ZNF2Q9BSG1 426 aaPredicted RBP10.23□□□□□ -0.77
CLK3-224ENST00000568605 DCUN1D5Q9BTE7 237 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 ZFP57Q9NU63 452 aa10.23□□□□□ -0.77
CLK3-224ENST00000568605 TRAV41A0A0B4J266 112 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 A0A1W2PRX2 142 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 NUDT19A8MXV4 375 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 GABARAPH6UMI1 98 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 CA2P00918 260 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 PF4P02776 101 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 IFNA6P05013 189 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 ELANEP08246 267 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 RFX2P48378 723 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 LINC00205P59089 165 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 RPL23AP62750 156 aaKnown RBP10.22□□□□□ -0.77
CLK3-224ENST00000568605 IL18Q14116 193 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 ECSCRQ19T08 205 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 RNASE12Q5GAN4 147 aaKnown RBP10.22□□□□□ -0.77
CLK3-224ENST00000568605 RNASE10Q5GAN6 216 aaKnown RBP10.22□□□□□ -0.77
CLK3-224ENST00000568605 OR2B11Q5JQS5 317 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 PYHIN1Q6K0P9 492 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 C10orf99Q6UWK7 81 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 CMTM1Q8IZ96 169 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 POC5Q8NA72 575 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 VSTM2AQ8TAG5 236 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 FAM110DQ8TAY7 271 aaPredicted RBP10.22□□□□□ -0.77
CLK3-224ENST00000568605 ARPC1AQ92747 370 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 AIFM2Q9BRQ8 373 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 SLIRPQ9GZT3 109 aaKnown RBP10.22□□□□□ -0.77
CLK3-224ENST00000568605 MIXL1Q9H2W2 232 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 CCL28Q9NRJ3 127 aa10.22□□□□□ -0.77
CLK3-224ENST00000568605 LINC01548A6NM66 108 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 CTDSP2O14595 271 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 CNIH1O95406 144 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 IGLV2-14P01704 120 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 IGHG4P01861 327 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 CD40LGP29965 261 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 S100A5P33763 92 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 CRIP2P52943 208 aaPredicted RBP10.21□□□□□ -0.77
CLK3-224ENST00000568605 TAS2R19P59542 299 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 UBE2KP61086 200 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 CX3CL1P78423 397 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 TCTEX1D4Q5JR98 221 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 LPCAT3Q6P1A2 487 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 DHRS11Q6UWP2 260 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 ZNF562Q6V9R5 426 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 MFSD4AQ8N468 514 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 CLCC1Q96S66 551 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 MTFP1Q9UDX5 166 aa10.21□□□□□ -0.77
CLK3-224ENST00000568605 VWFP04275 2813 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 A0A1W2PN81 502 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 ADARB2-AS1A8MUL3 147 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 RBFOX2O43251 390 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-224ENST00000568605 TNFSF12O43508 249 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 ACTL6BO94805 426 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 HRASP01112 189 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 IGLV2-23P01705 113 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 CHRNA7P36544 502 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 GNB1P62873 340 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 NDPQ00604 133 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 CFHR3Q02985 330 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 VAX1Q5SQQ9 334 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 AADACL3Q5VUY0 350 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 HIST2H2BDQ6DRA6 164 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 TMEM65Q6PI78 240 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 ZNF818PQ6ZRF7 136 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 ARRDC1Q8N5I2 433 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 RNF152Q8N8N0 203 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 TEX45Q8NA69 505 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 KLHL30-AS1Q8NEE0 82 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 OR52I2Q8NH67 350 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 CD300LFQ8TDQ1 290 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 SMIM4Q8WVI0 70 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 FXYD6Q9H0Q3 95 aa10.2□□□□□ -0.78
CLK3-224ENST00000568605 RBM38Q9H0Z9 239 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms