RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	GNGT1	P63211	74 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	MED22	Q15528	200 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	MRGPRG-AS1	Q2M3A8	158 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	CCDC58	Q4VC31	144 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	ZNF585B	Q52M93	769 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	OR4A47	Q6IF82	309 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	CLEC19A	Q6UXS0	136 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	IDO2	Q6ZQW0	420 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	OR52I1	Q8NGK6	324 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488		S4R3C0	116 aa		11.93	□□□□□ -0.5
CLK3-223	ENST00000568488	SAC3D1	A6NKF1	404 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	GYG2	O15488	501 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	PRSS8	Q16651	343 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	ZIK1	Q3SY52	487 aa	Predicted RBP	11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	VMA21	Q3ZAQ7	101 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	ZNF880	Q6PDB4	577 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	OR5B3	Q8NH48	314 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	PTX4	Q96A99	478 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488	OAZ3	Q9UMX2	235 aa		11.92	□□□□□ -0.5
CLK3-223	ENST00000568488		M0R2N4	97 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	DEFB4A	O15263	64 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	ACTL6B	O94805	426 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	NAPSA	O96009	420 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	SCT	P09683	121 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	LIMS3	P0CW19	117 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	LIMS4	P0CW20	117 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	MFAP2	P55001	183 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	GLT8D1	Q68CQ7	371 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	ZNF575	Q86XF7	245 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	TTC9C	Q8N5M4	171 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	SPIN2A	Q99865	258 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	SPIN2B	Q9BPZ2	258 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	MAP6D1	Q9H9H5	199 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	AP4S1	Q9Y587	144 aa		11.91	□□□□□ -0.5
CLK3-223	ENST00000568488	TRBV5-5	A0A0J9YX44	114 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488		A8MWP6	167 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	DYNC1I1	O14576	645 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	RTL8C	O15255	209 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	GYS2	P54840	703 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	HLA-DRB3	P79483	266 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	MED21	Q13503	144 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	HERC1	Q15751	4861 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	RTL8B	Q17RB0	113 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488		Q499Y3	187 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	DNAL1	Q4LDG9	190 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	TMEM177	Q53S58	311 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	OR10K2	Q6IF99	312 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	C19orf35	Q6ZS72	473 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	MOB1B	Q7L9L4	216 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	CDH26	Q8IXH8	852 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	TEX45	Q8NA69	505 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	OR11H2	Q8NH07	326 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	MARC2	Q969Z3	335 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	SMIM19	Q96E16	107 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	GALNT14	Q96FL9	552 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	SPAG8	Q99932	426 aa	Predicted RBP	11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	ORC6	Q9Y5N6	252 aa		11.9	□□□□□ -0.5
CLK3-223	ENST00000568488	OGG1	O15527	345 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	UBE2K	P61086	200 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	TAGLN	Q01995	201 aa	Known RBP	11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	C10orf55	Q5SWW7	151 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	OR2G6	Q5TZ20	316 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	UNQ9165/PRO28630	Q6UXU0	137 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	SLC25A42	Q86VD7	318 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	CCDC140	Q96MF4	163 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488		Q96MT0	163 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	PLEKHJ1	Q9NW61	149 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	RDH8	Q9NYR8	311 aa		11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	MRPL27	Q9P0M9	148 aa	Known RBP	11.89	□□□□□ -0.51
CLK3-223	ENST00000568488	HMX3	A6NHT5	357 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	MPTX1	A8MV57	137 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	S1PR2	O95136	353 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	HTR2C	P28335	458 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	ODF3L2	Q3SX64	289 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	TMPRSS11A	Q6ZMR5	421 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	C6orf62	Q9GZU0	229 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	CSTL1	Q9H114	145 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	C11orf68	Q9H3H3	251 aa	Known RBP	11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	RIMS4	Q9H426	269 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	ZNF430	Q9H8G1	570 aa	Predicted RBP	11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	SDHAF2	Q9NX18	166 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	BABAM2	Q9NXR7	383 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	GHRL	Q9UBU3	117 aa		11.88	□□□□□ -0.51
CLK3-223	ENST00000568488	DPPA5	A6NC42	116 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	C11orf94	C9JXX5	98 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	C8orf88	P0DMB2	117 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	RRAS	P10301	218 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	FCGR1A	P12314	374 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	GABRB1	P18505	474 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	ETV1	P50549	477 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	YIF1B	Q5BJH7	314 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	APRG1	Q8IVJ8	170 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	ZFP41	Q8N8Y5	198 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	OR4A5	Q8NH83	315 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	CD300LF	Q8TDQ1	290 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	EEF1AKMT3	Q96AZ1	226 aa		11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	CENPN	Q96H22	339 aa	Predicted RBP	11.87	□□□□□ -0.51
CLK3-223	ENST00000568488	NICN1	Q9BSH3	213 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms