RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 THBS3P49746 956 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 ZNF134P52741 427 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 TAGLNQ01995 201 aaKnown RBP7.33□□□□□ -1.24
VPS39-207ENST00000563692 ID3Q02535 119 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 ZNF585BQ52M93 769 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 FAM53AQ6NSI3 398 aaPredicted RBP7.33□□□□□ -1.24
VPS39-207ENST00000563692 BTNL3Q6UXE8 466 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 LYG1Q8N1E2 194 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 C8orf31Q8N9H6 132 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 AIFM2Q9BRQ8 373 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 BPESC1Q9GZL8 116 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 SLC25A31Q9H0C2 315 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 CTSZQ9UBR2 303 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 CACFD1Q9UGQ2 172 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 RCL1Q9Y2P8 373 aaKnown RBP7.33□□□□□ -1.24
VPS39-207ENST00000563692 A0A096LNT2 108 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 RNF222A6NCQ9 220 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 FAM90A26D6RGX4 464 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 TOR1AO14656 332 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 RBFOX2O43251 390 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS39-207ENST00000563692 MED6O75586 246 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 HKR1P10072 659 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 TPT1P13693 172 aaKnown RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 HNF1AP20823 631 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 IL3RAP26951 378 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 GPR6P46095 362 aaPredicted RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 PRRX1P54821 245 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 RPL23AP62750 156 aaKnown RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 RPL30P62888 115 aaKnown RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 ZNF816Q0VGE8 651 aaPredicted RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 ZNF273Q14593 569 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 AVPI1Q5T686 147 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 PRAMEF5Q5TYX0 476 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 EIF5AL1Q6IS14 154 aaKnown RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 SLC25A48Q6ZT89 311 aaKnown RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 TCF23Q7RTU1 214 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 H2BFWTQ7Z2G1 175 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 PRIMA1Q86XR5 153 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 OR8H3Q8N146 312 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 SCARB1Q8WTV0 552 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 PHYHIPLQ96FC7 376 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 ZNF471Q9BX82 626 aaPredicted RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 IFI27L2Q9H2X8 130 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.32□□□□□ -1.24
VPS39-207ENST00000563692 COA4Q9NYJ1 87 aa7.32□□□□□ -1.24
VPS39-207ENST00000563692 PPIAL4CA0A0B4J2A2 164 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 IGHV4-61A0A0C4DH41 118 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 FAM90A9PA6NNJ1 464 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 LINC00473A8K010 186 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 C17orf98A8MV24 154 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 VWC2LB2RUY7 222 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 CHST1O43916 411 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 RAMP3O60896 148 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 FCGR3BO75015 233 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 PITX3O75364 302 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 JTBO76095 146 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 LY86O95711 162 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 KRASP01116 189 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 IGKV1-39P01597 117 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 IGKV1-5P01602 117 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 IGHV3-7P01780 117 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 RBP4P02753 201 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 IGKV1D-39P04432 117 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 PPIAL4GP0DN37 164 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 IGHV4-31P0DP07 118 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 RRASP10301 218 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 CCL3L1P16619 93 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 EPHA1P21709 976 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 HTR2BP41595 481 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 GNG10P50151 68 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 ERVK-16P61578 105 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 POLR2GP62487 172 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS39-207ENST00000563692 GNB2P62879 340 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 EXOSC2Q13868 293 aaKnown RBP7.31□□□□□ -1.24
VPS39-207ENST00000563692 RPL39P5Q59GN2 51 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 OR2B11Q5JQS5 317 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 CXorf66Q5JRM2 361 aaPredicted RBP7.31□□□□□ -1.24
VPS39-207ENST00000563692 ARFGEF3Q5TH69 2177 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 WDR25Q64LD2 544 aaPredicted RBP7.31□□□□□ -1.24
VPS39-207ENST00000563692 NCR3LG1Q68D85 454 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 ZNF841Q6ZN19 808 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 LINC00311Q8N616 119 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 ZNF439Q8NDP4 499 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 OR10X1Q8NGY0 326 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 OR4S2Q8NH73 311 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 OR9G1Q8NH87 305 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 ST8SIA2Q92186 375 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 TNFRSF14Q92956 283 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 LEAP2Q969E1 77 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 TMEM186Q96B77 213 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 RAB40CQ96S21 281 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 PATZ1Q9HBE1 687 aaKnown RBP7.31□□□□□ -1.24
VPS39-207ENST00000563692 TMEM160Q9NX00 188 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 CACNG5Q9UF02 275 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 SESN1Q9Y6P5 492 aa7.31□□□□□ -1.24
VPS39-207ENST00000563692 A0A087X0M5 115 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SAA2-SAA4A0A096LPE2 208 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 BORCS7-ASMTA0A0B4J1R7 106 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 A0A1B0GX30 115 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 A0A1W2PPE3 182 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms