RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PRR13Q9NZ81 148 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 CADP27708 2225 aa6.21□□□□□ -1.42
VPS39-204ENST00000561818 LOC400499M0QZD8 3231 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 SAA2-SAA4A0A096LPE2 208 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 A0A1B0GW64 132 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 C15orf61A6NNL5 157 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 CEBPZOSA8MTT3 80 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 C17orf98A8MV24 154 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 DVL1O14640 695 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 FCGR3BO75015 233 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 S1PR2O95136 353 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 TSPAN15O95858 294 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 KRASP01116 189 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 IFNA17P01571 189 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 IGHV2-70P01814 119 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 SAA2P0DJI9 122 aaPredicted RBP6.2□□□□□ -1.42
VPS39-204ENST00000561818 USF1P22415 310 aaPredicted RBP6.2□□□□□ -1.42
VPS39-204ENST00000561818 NFYBP25208 207 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 MAS1LP35410 378 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 CAMLGP49069 296 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 VMA21Q3ZAQ7 101 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 CXorf66Q5JRM2 361 aaPredicted RBP6.2□□□□□ -1.42
VPS39-204ENST00000561818 TOR2AQ5JU69 321 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 CCDC144NLQ6NUI1 221 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 TMEM14EPQ6UXP3 125 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 C22orf34Q6ZV56 151 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 LYG1Q8N1E2 194 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 SVBPQ8N300 66 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 FAM216BQ8N7L0 139 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 DEFB108BQ8NET1 73 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 OR13D1Q8NGV5 346 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 OR2G3Q8NGZ4 309 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 LYPD6BQ8NI32 183 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 RFESDQ8TAC1 157 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 LINC01560Q8TB33 94 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 DDB2Q92466 427 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 H1FXQ92522 213 aaKnown RBP6.2□□□□□ -1.42
VPS39-204ENST00000561818 RHOVQ96L33 236 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 SRSF8Q9BRL6 282 aaKnown RBP6.2□□□□□ -1.42
VPS39-204ENST00000561818 SLC35D1Q9NTN3 355 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 WASHC3Q9Y3C0 194 aa6.2□□□□□ -1.42
VPS39-204ENST00000561818 CFAP47Q6ZTR5 3102 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TRAV1-1A0A0B4J248 108 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 J3QR06 171 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 NDUFS8O00217 210 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 CYB5BO43169 146 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 IGKV1-39P01597 117 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 IGKV1D-39P04432 117 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 IGHV1-8P0DP01 117 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 G6PCP35575 357 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 EFNA4P52798 201 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 SUB1P53999 127 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS39-204ENST00000561818 DVL1P1P54792 670 aaPredicted RBP6.19□□□□□ -1.42
VPS39-204ENST00000561818 SLC38A11Q08AI6 406 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 ZNF816Q0VGE8 651 aaPredicted RBP6.19□□□□□ -1.42
VPS39-204ENST00000561818 PMS2P11Q13670 270 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 SSX2Q16385 188 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 CT45A1Q5HYN5 189 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TMEM200BQ69YZ2 307 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 C11orf71Q6IPW1 123 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TGIF2LYQ8IUE0 185 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TGIF2LXQ8IUE1 241 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TPRX1Q8N7U7 411 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 OR5AN1Q8NGI8 311 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 CT45A3Q8NHU0 189 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 ITLN2Q8WWU7 325 aaPredicted RBP6.19□□□□□ -1.42
VPS39-204ENST00000561818 FLYWCH2Q96CP2 140 aaKnown RBP6.19□□□□□ -1.42
VPS39-204ENST00000561818 CLEC7AQ9BXN2 247 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TMEM133Q9H2Q1 129 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TMEM14BQ9NUH8 114 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 TMEM140Q9NV12 185 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 UQCC1Q9NVA1 299 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 KPTNQ9Y664 436 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 SPTBN4Q9H254 2564 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 PIEZO2Q9H5I5 2752 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 DYSFO75923 2080 aa6.19□□□□□ -1.42
VPS39-204ENST00000561818 MGAQ8IWI9 3026 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 IGHV3-43A0A0B4J1X8 118 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 TRAV39A0A0B4J263 110 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 IGSF23A1L1A6 192 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 FAM24AA6NFZ4 105 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 LINC00473A8K010 186 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 KIAA1324LA8MWY0 1029 aaPredicted RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 CORTO00230 105 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 PPIHO43447 177 aaKnown RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 ENSAO43768 121 aaKnown RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 RAMP3O60896 148 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 F12P00748 615 aaPredicted RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 ARG1P05089 322 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 FAM157CP0CG43 387 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 IGHV3-43DP0DP04 118 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 IGFBP2P18065 325 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 LOXP28300 417 aaPredicted RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 GPR6P46095 362 aaPredicted RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 HOXA1P49639 335 aaPredicted RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 DYNLT3P51808 116 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 HSPE1P61604 102 aaKnown RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 DLK1P80370 383 aa6.18□□□□□ -1.42
VPS39-204ENST00000561818 ERHP84090 104 aaKnown RBP6.18□□□□□ -1.42
VPS39-204ENST00000561818 LY6DQ14210 128 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms