RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PLEKHA2Q9HB19 425 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 ZFP57Q9NU63 452 aa17.33■□□□□ 0.36
CLN3-209ENST00000561689 ARHGAP32A7KAX9 2087 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 A0A0D9SG52 128 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 LINC00862A6NCI5 91 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 MARCH11A6NNE9 402 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 ATG12O94817 140 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 C4BPBP20851 252 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 KIR2DS2P43631 304 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 KRTAP10-9P60411 292 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 ID3Q02535 119 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 ZNF345Q14585 488 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 C10orf105Q8TEF2 133 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 R3HDM4Q96D70 268 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 BARX1Q9HBU1 254 aaPredicted RBP17.32■□□□□ 0.36
CLN3-209ENST00000561689 SIRT7Q9NRC8 400 aa17.32■□□□□ 0.36
CLN3-209ENST00000561689 RBFOX2O43251 390 aaKnown RBP eCLIP17.31■□□□□ 0.36
CLN3-209ENST00000561689 CRYZL1O95825 349 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 P0C879 139 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 CLEC2AQ6UVW9 174 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 VKORC1L1Q8N0U8 176 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 DMBX1Q8NFW5 382 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 OR4S2Q8NH73 311 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 CLEC7AQ9BXN2 247 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 CSMD2Q7Z408 3487 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 SSSCA1O60232 199 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 NUP62P37198 522 aaPredicted RBP17.31■□□□□ 0.36
CLN3-209ENST00000561689 CLLU1Q5K131 121 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 SSX9Q7RTT3 188 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 H2BFWTQ7Z2G1 175 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 PNKDQ8N490 385 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 ST6GALNAC6Q969X2 333 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 TMEM186Q96B77 213 aa17.31■□□□□ 0.36
CLN3-209ENST00000561689 E5RGE8 158 aa17.3■□□□□ 0.36
CLN3-209ENST00000561689 PRRX1P54821 245 aa17.3■□□□□ 0.36
CLN3-209ENST00000561689 MMP26Q9NRE1 261 aa17.3■□□□□ 0.36
CLN3-209ENST00000561689 NSG2Q9Y328 171 aa17.3■□□□□ 0.36
CLN3-209ENST00000561689 MED13LQ71F56 2210 aa17.3■□□□□ 0.36
CLN3-209ENST00000561689 M0R1W7 72 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 IGLV1-47P01700 117 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 HKR1P10072 659 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 AQP10Q96PS8 301 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 AUP1Q9Y679 476 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 IGHV4-30-2A0A087WSY4 118 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 IGHV4-61A0A0C4DH41 118 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 ENSAO43768 121 aaKnown RBP17.29■□□□□ 0.36
CLN3-209ENST00000561689 IGKV1-16P04430 117 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 HLA-DRB5Q30154 266 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 TNFRSF14Q92956 283 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 ZC4H2Q9NQZ6 224 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 SLC35D1Q9NTN3 355 aa17.29■□□□□ 0.36
CLN3-209ENST00000561689 HELZ2Q9BYK8 2649 aaKnown RBP17.28■□□□□ 0.36
CLN3-209ENST00000561689 KANTRA0A1W2PQU2 76 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 NDUFS8O00217 210 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 WRBO00258 174 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 CHST1O43916 411 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 RPL12P30050 165 aaKnown RBP17.28■□□□□ 0.36
CLN3-209ENST00000561689 ZNF137PP52743 207 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 MIDNQ504T8 468 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 GSX2Q9BZM3 304 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 LPAR2Q9HBW0 351 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 MAP1AP78559 2803 aaPredicted RBP17.28■□□□□ 0.36
CLN3-209ENST00000561689 POLQO75417 2590 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 PTPN13Q12923 2485 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 VWC2LB2RUY7 222 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 NQO2P16083 231 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 PAX2Q02962 417 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 RTL8BQ17RB0 113 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 ALKAL2Q6UX46 152 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 TGIF2LXQ8IUE1 241 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 OR13D1Q8NGV5 346 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 COA4Q9NYJ1 87 aa17.28■□□□□ 0.36
CLN3-209ENST00000561689 A8MXK9 166 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 BUB1B-PAK6H3BSN5 160 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 BCL2L11O43521 198 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 TMEM50AO95807 157 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 IL3RAP26951 378 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 ERVK-16P61578 105 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 KLRD1Q13241 179 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 FAM71F2Q6NXP2 309 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 CLEC9AQ6UXN8 241 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 BEND2Q8NDZ0 799 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 NABP2Q9BQ15 211 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 C11orf1Q9H5F2 150 aa17.27■□□□□ 0.36
CLN3-209ENST00000561689 IGHV2-70DA0A0C4DH43 119 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 FAM157AC9JC47 383 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 H0YJW9 148 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 H7C2Y5 167 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 RBMXL2O75526 392 aaKnown RBP17.26■□□□□ 0.35
CLN3-209ENST00000561689 OR9G9P0C7N8 305 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 PAX1P15863 534 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 PRTN3P24158 256 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 PDZD9Q8IXQ8 264 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 OR5AN1Q8NGI8 311 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 OR4P4Q8NGL7 312 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.26■□□□□ 0.35
CLN3-209ENST00000561689 PVALBP20472 110 aaPredicted RBP17.26■□□□□ 0.35
CLN3-209ENST00000561689 P2RY1P47900 373 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 VAMP2P63027 116 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 HIST2H2BCQ6DN03 193 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms