RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 HARBI1Q96MB7 349 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 CMSS1Q9BQ75 279 aaKnown RBP12.4□□□□□ -0.42
CLN3-208ENST00000561505 MND1Q9BWT6 205 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 PEMTQ9UBM1 199 aa12.4□□□□□ -0.42
CLN3-208ENST00000561505 ZNF230Q9UIE0 474 aaPredicted RBP12.4□□□□□ -0.42
CLN3-208ENST00000561505 RBMY1BA6NDE4 496 aaKnown RBP12.39□□□□□ -0.43
CLN3-208ENST00000561505 RBMY1EA6NEQ0 496 aaKnown RBP12.39□□□□□ -0.43
CLN3-208ENST00000561505 MSGN1A6NI15 193 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 FAM223BA6NKX1 122 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 RBMY1DP0C7P1 496 aaKnown RBP12.39□□□□□ -0.43
CLN3-208ENST00000561505 DEFA5Q01523 94 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 ZNF45Q02386 682 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 TPBGQ13641 420 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 PRSS8Q16651 343 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 KLK9Q2XQG4 91 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 DEFB114Q30KQ6 69 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 FAM223AQ8IWN6 122 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 NEURL2Q9BR09 285 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 RETNQ9HD89 108 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 AKIP1Q9NQ31 210 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 KLK9Q9UKQ9 250 aa12.39□□□□□ -0.43
CLN3-208ENST00000561505 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.38□□□□□ -0.43
CLN3-208ENST00000561505 FABP7O15540 132 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 P2RY14Q15391 338 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 CD300EQ496F6 205 aaPredicted RBP12.38□□□□□ -0.43
CLN3-208ENST00000561505 FAM209BQ5JX69 171 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 TTC9CQ8N5M4 171 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 OR56B1Q8NGI3 324 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 SRSF12Q8WXF0 261 aaKnown RBP12.38□□□□□ -0.43
CLN3-208ENST00000561505 OR2D2Q9H210 308 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 COA4Q9NYJ1 87 aa12.38□□□□□ -0.43
CLN3-208ENST00000561505 LGALS9O00182 355 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 SHOXO15266 292 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 CD7P09564 240 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 CD3GP09693 182 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 DUTP33316 252 aaKnown RBP12.37□□□□□ -0.43
CLN3-208ENST00000561505 KIR2DS2P43631 304 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 CD81P60033 236 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 RHOGP84095 191 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 C2orf76Q3KRA6 126 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 IGSF11Q5DX21 431 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 Q6ZS49 121 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 FAM3DQ96BQ1 224 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 KCTD12Q96CX2 325 aaKnown RBP12.37□□□□□ -0.43
CLN3-208ENST00000561505 ADTRPQ96IZ2 230 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 PLEKHA3Q9HB20 300 aa12.37□□□□□ -0.43
CLN3-208ENST00000561505 A0A0B4J203 849 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 CASQ2O14958 399 aaPredicted RBP12.36□□□□□ -0.43
CLN3-208ENST00000561505 TPPPO94811 219 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 FCGR3AP08637 254 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 GSTT2P0CG29 244 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 GSTT2BP0CG30 244 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 RANBP1P43487 201 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 RTL8BQ17RB0 113 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 VMA21Q3ZAQ7 101 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 OGFRL1Q5TC84 451 aaPredicted RBP12.36□□□□□ -0.43
CLN3-208ENST00000561505 OR10J5Q8NHC4 309 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 OSR1Q8TAX0 266 aaPredicted RBP12.36□□□□□ -0.43
CLN3-208ENST00000561505 PLGRKTQ9HBL7 147 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 SLC2A8Q9NY64 477 aa12.36□□□□□ -0.43
CLN3-208ENST00000561505 TECRQ9NZ01 308 aaKnown RBP12.36□□□□□ -0.43
CLN3-208ENST00000561505 AK6Q9Y3D8 172 aaKnown RBP12.36□□□□□ -0.43
CLN3-208ENST00000561505 LINC00473A8K010 186 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 DENRO43583 198 aaKnown RBP12.35□□□□□ -0.43
CLN3-208ENST00000561505 ATP5G2Q06055 141 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 EXOSC2Q13868 293 aaKnown RBP12.35□□□□□ -0.43
CLN3-208ENST00000561505 TRAM1Q15629 374 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 RAB11BQ15907 218 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 H1FOOQ8IZA3 346 aaPredicted RBP12.35□□□□□ -0.43
CLN3-208ENST00000561505 DEFB125Q8N687 156 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 NECAP1Q8NC96 275 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 FAM110AQ9BQ89 295 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 CENPOQ9BU64 300 aa12.35□□□□□ -0.43
CLN3-208ENST00000561505 C2orf70A6NJV1 201 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 OR11H12B2RN74 326 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 RAB27BO00194 218 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 MFNGO00587 321 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 BET1O15155 118 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 ARL6IP5O75915 188 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 PSMA1P25786 263 aaKnown RBP12.34□□□□□ -0.43
CLN3-208ENST00000561505 PLA2G7Q13093 441 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 CBX3Q13185 183 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 CDK10Q15131 360 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 TNXAQ16473 311 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 LIPKQ5VXJ0 399 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 GPHB5Q86YW7 130 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 SPIN2AQ99865 258 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 SPIN2BQ9BPZ2 258 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 DUSP21Q9H596 190 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 ZNF430Q9H8G1 570 aaPredicted RBP12.34□□□□□ -0.43
CLN3-208ENST00000561505 RAB22AQ9UL26 194 aa12.34□□□□□ -0.43
CLN3-208ENST00000561505 TMEM272A0A1B0GTI8 110 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 APELAP0DMC3 54 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 FOLR2P14207 255 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 PSMD7P51665 324 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 CLDN12P56749 244 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 MED22Q15528 200 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 UFD1Q92890 307 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 TMEM203Q969S6 136 aa12.33□□□□□ -0.44
CLN3-208ENST00000561505 RAB3CQ96E17 227 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms