RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 FAM53AQ6NSI3 398 aaPredicted RBP9.56□□□□□ -0.88
CUX1-218ENST00000560541 Q6ZN92 141 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 LINC00696Q6ZRV3 163 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 ZNF525Q8N782 197 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 TMEM45BQ96B21 275 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 POM121L2Q96KW2 1035 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 RBKSQ9H477 322 aa9.56□□□□□ -0.88
CUX1-218ENST00000560541 BOKQ9UMX3 212 aaPredicted RBP9.56□□□□□ -0.88
CUX1-218ENST00000560541 SPENQ96T58 3664 aaKnown RBP9.56□□□□□ -0.88
CUX1-218ENST00000560541 SERTM2A0A1B0GWG4 89 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 CLDN18P56856 261 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 TESK1Q15569 626 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 SRSF7Q16629 238 aaKnown RBP eCLIP9.55□□□□□ -0.88
CUX1-218ENST00000560541 DCAF12Q5T6F0 453 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 OR2M7Q8NG81 312 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 TRAPPC2LQ9UL33 140 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 COX11Q9Y6N1 276 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 RAB29O14966 203 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 NEURL1O76050 574 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 SYNGR4O95473 234 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 PLP2Q04941 152 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 PRR27Q6MZM9 219 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 OR4C12Q96R67 309 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 PRSS50Q9UI38 385 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 SERPINA7P05543 415 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 CEBPDP49716 269 aaPredicted RBP9.55□□□□□ -0.88
CUX1-218ENST00000560541 PRRX1P54821 245 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 GNG3P63215 75 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 ADIRFQ15847 76 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 ZNF585BQ52M93 769 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 VWA1Q6PCB0 445 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 ZCCHC14Q8WYQ9 949 aaKnown RBP9.55□□□□□ -0.88
CUX1-218ENST00000560541 C20orf144Q9BQM9 153 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 PCGF1Q9BSM1 259 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 LAMTOR2Q9Y2Q5 125 aa9.55□□□□□ -0.88
CUX1-218ENST00000560541 IGKV3D-15A0A087WSY6 115 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 MAP1LC3B2A6NCE7 125 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 ZNF891A8MT65 544 aaPredicted RBP9.54□□□□□ -0.88
CUX1-218ENST00000560541 ARR3P36575 388 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 CDKN1AP38936 164 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 MDH2P40926 338 aaKnown RBP9.54□□□□□ -0.88
CUX1-218ENST00000560541 MAP1LC3BQ9GZQ8 125 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 CISD1Q9NZ45 108 aaKnown RBP9.54□□□□□ -0.88
CUX1-218ENST00000560541 LOXL2Q9Y4K0 774 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 IGHV2-70DA0A0C4DH43 119 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 ODAMA1E959 279 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 CLDN1O95832 211 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 MT-CO3P00414 261 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 DEFA4P12838 97 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 HNRNPA3P51991 378 aaKnown RBP9.54□□□□□ -0.88
CUX1-218ENST00000560541 TMEM183BQ1AE95 376 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 C6orf15Q6UXA7 325 aaPredicted RBP9.54□□□□□ -0.88
CUX1-218ENST00000560541 SMIM12Q96EX1 92 aa9.54□□□□□ -0.88
CUX1-218ENST00000560541 PPP5D1E7EU14 171 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 IGKV1D-33P01593 117 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 IGKV1-33P01594 117 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 NRN1LQ496H8 165 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 STXBP6Q8NFX7 210 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SRD5A3Q9H8P0 318 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SLC25A22Q9H936 323 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 TNRC6AQ8NDV7 1962 aaKnown RBP9.53□□□□□ -0.88
CUX1-218ENST00000560541 TRAV1-1A0A0B4J248 108 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 RAMP3O60896 148 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 OR2H2O95918 312 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 KRASP01116 189 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 RNPS1Q15287 305 aaKnown RBP9.53□□□□□ -0.88
CUX1-218ENST00000560541 SPINK9Q5DT21 86 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 MRPL52Q86TS9 123 aaKnown RBP9.53□□□□□ -0.88
CUX1-218ENST00000560541 ZNF808Q8N4W9 903 aaPredicted RBP9.53□□□□□ -0.88
CUX1-218ENST00000560541 LHX4Q969G2 390 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 ZC2HC1AQ96GY0 325 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 TTTY12Q9BZ98 90 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 LINC00470Q9BZP3 86 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SDF2L1Q9HCN8 221 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SS18L1O75177 396 aaPredicted RBP9.53□□□□□ -0.88
CUX1-218ENST00000560541 ZNF737O75373 536 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 HBG1P69891 147 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 HBG2P69892 147 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 PLGLB1Q02325 96 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SLC38A11Q08AI6 406 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SMIM21Q3B7S5 101 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 Q6P435 159 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 WDR86Q86TI4 376 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 GATAD1Q8WUU5 269 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 SMIM7Q9BQ49 75 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 FAM173AQ9BQD7 235 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 WDR61Q9GZS3 305 aaKnown RBP9.53□□□□□ -0.88
CUX1-218ENST00000560541 TMEM9BQ9NQ34 198 aa9.53□□□□□ -0.88
CUX1-218ENST00000560541 TNRC6BQ9UPQ9 1833 aaKnown RBP9.52□□□□□ -0.89
CUX1-218ENST00000560541 IGHV2OR16-5A0A0B4J2B6 119 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 CDIPTO14735 213 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 TFF1P04155 84 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 CELA3BP08861 270 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 ZNF816Q0VGE8 651 aaPredicted RBP9.52□□□□□ -0.89
CUX1-218ENST00000560541 SCGB2A2Q13296 93 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 RTP5Q14D33 572 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 OR1C1Q15619 314 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 LRRC75BQ2VPJ9 315 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 ABHD17BQ5VST6 288 aa9.52□□□□□ -0.89
CUX1-218ENST00000560541 FGFRL1Q8N441 504 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms