RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 OR51H1Q8NH63 302 aa17.29■□□□□ 0.36
SNX1-210ENST00000560260 MCUBQ9NWR8 336 aa17.29■□□□□ 0.36
SNX1-210ENST00000560260 NBR2O15453 112 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 CRYZL1O95825 349 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 IGLV2-23P01705 113 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 TAGLNQ01995 201 aaKnown RBP17.28■□□□□ 0.36
SNX1-210ENST00000560260 TMEM95Q3KNT9 176 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 NPBQ8NG41 125 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 OR8H1Q8NGG4 311 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 LINC01006Q8NI28 216 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 C16orf95Q9H693 158 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 COL6A5A8TX70 2615 aa17.28■□□□□ 0.36
SNX1-210ENST00000560260 SRRM4A7MD48 611 aaKnown RBP17.27■□□□□ 0.36
SNX1-210ENST00000560260 M0QZK8 103 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 VSIG10L2P0DP72 767 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 RRASP10301 218 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 RTL8BQ17RB0 113 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 IDO2Q6ZQW0 420 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 BORCS5Q969J3 196 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 FLYWCH2Q96CP2 140 aaKnown RBP17.27■□□□□ 0.36
SNX1-210ENST00000560260 PRRT1Q99946 306 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 SLC2A9Q9NRM0 540 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 TPSG1Q9NRR2 321 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 PRELID3BQ9Y3B1 194 aa17.27■□□□□ 0.36
SNX1-210ENST00000560260 LINC00854A0A1B0GVQ3 168 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 RAMP3O60896 148 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 CD40LGP29965 261 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 FAUP35544 74 aaKnown RBP17.26■□□□□ 0.35
SNX1-210ENST00000560260 RPS16P62249 146 aaKnown RBP17.26■□□□□ 0.35
SNX1-210ENST00000560260 ZNF846Q147U1 533 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 PSG5Q15238 335 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 AWAT1Q58HT5 328 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 LPCAT3Q6P1A2 487 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 OR4F5Q8NH21 305 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 DEDD2Q8WXF8 326 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 HARBI1Q96MB7 349 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 RNF5Q99942 180 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 CCDC32Q9BV29 185 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 PRSS22Q9GZN4 317 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 FBXL15Q9H469 300 aa17.26■□□□□ 0.35
SNX1-210ENST00000560260 RRHO14718 337 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 RND3P61587 244 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 CATR1Q13166 79 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 C5orf64Q2M2E5 130 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 C9orf152Q5JTZ5 239 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 TBC1D26Q86UD7 250 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 CMTM1Q8IZ96 169 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 SPAG16Q8N0X2 631 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 HSPB9Q9BQS6 159 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 RTBDNQ9BSG5 229 aaPredicted RBP17.25■□□□□ 0.35
SNX1-210ENST00000560260 WDR12Q9GZL7 423 aaKnown RBP17.25■□□□□ 0.35
SNX1-210ENST00000560260 C5orf66Q9H5L9 145 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 SERTAD4Q9NUC0 356 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 LIN7CQ9NUP9 197 aaKnown RBP17.25■□□□□ 0.35
SNX1-210ENST00000560260 VSIG4Q9Y279 399 aa17.25■□□□□ 0.35
SNX1-210ENST00000560260 PLA2G10O15496 165 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 SLC25A17O43808 307 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 SPDEFO95238 335 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 CRYGBP07316 175 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 CTSDP07339 412 aaPredicted RBP17.24■□□□□ 0.35
SNX1-210ENST00000560260 BTCP35070 178 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 INPP1P49441 399 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 OR4S2Q8NH73 311 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 ZNF486Q96H40 463 aaPredicted RBP17.24■□□□□ 0.35
SNX1-210ENST00000560260 TSNAXQ99598 290 aaKnown RBP17.24■□□□□ 0.35
SNX1-210ENST00000560260 SCP2D1Q9UJQ7 156 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 GPR132Q9UNW8 380 aa17.24■□□□□ 0.35
SNX1-210ENST00000560260 TENM1Q9UKZ4 2725 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 CLPSL1A2RUU4 121 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 LINC01548A6NM66 108 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 SHOXO15266 292 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 RBFOX2O43251 390 aaKnown RBP eCLIP17.23■□□□□ 0.35
SNX1-210ENST00000560260 KIR2DS2P43631 304 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 COMPP49747 757 aaPredicted RBP17.23■□□□□ 0.35
SNX1-210ENST00000560260 PIGPP57054 158 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 FOXL1Q12952 345 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 CBX3Q13185 183 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 SURF2Q15527 256 aaPredicted RBP17.23■□□□□ 0.35
SNX1-210ENST00000560260 OSR1Q8TAX0 266 aaPredicted RBP17.23■□□□□ 0.35
SNX1-210ENST00000560260 RASL11BQ9BPW5 248 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 KIAA1456Q9P272 454 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 METTL1Q9UBP6 276 aaKnown RBP17.23■□□□□ 0.35
SNX1-210ENST00000560260 MMP24Q9Y5R2 645 aa17.23■□□□□ 0.35
SNX1-210ENST00000560260 FCN1O00602 326 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 S1PR2O95136 353 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 F2RP25116 425 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 ECI1P42126 302 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 PROK1P58294 105 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 MRGPRG-AS1Q2M3A8 158 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 ZNF585BQ52M93 769 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 OR2T6Q8NHC8 308 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 ZFAND1Q8TCF1 268 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 BEX1Q9HBH7 125 aa17.22■□□□□ 0.35
SNX1-210ENST00000560260 MPPED1O15442 326 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 IGHG2P01859 326 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 HLA-DRB1P01911 266 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 SAA1P0DJI8 122 aaPredicted RBP17.21■□□□□ 0.35
SNX1-210ENST00000560260 LGALS7P47929 136 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 CCR6P51684 374 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 NDPQ00604 133 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms