RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SDHAF2Q9NX18 166 aa6.97□□□□□ -1.29
HDDC3-204ENST00000559834 SCN3BQ9NY72 215 aa6.97□□□□□ -1.29
HDDC3-204ENST00000559834 CEPT1Q9Y6K0 416 aa6.97□□□□□ -1.29
HDDC3-204ENST00000559834 IGKV1-6A0A0C4DH72 117 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 FAM223BA6NKX1 122 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 FOXI3A8MTJ6 420 aaPredicted RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 BET1O15155 118 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 DENRO43583 198 aaKnown RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 CREBL2O60519 120 aaPredicted RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 TUSC2O75896 110 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 PSMA1P25786 263 aaKnown RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 CD81P60033 236 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 UBE2KP61086 200 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 SSBP2P81877 361 aaPredicted RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 TNXAQ16473 311 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 PRSS8Q16651 343 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 C2orf76Q3KRA6 126 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 LINC00322Q6ZN03 302 aaPredicted RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 FAM223AQ8IWN6 122 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 ADAD2Q8NCV1 583 aaKnown RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 DYNLRB2Q8TF09 96 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 TMEM203Q969S6 136 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 FAM3DQ96BQ1 224 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 KCTD12Q96CX2 325 aaKnown RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 NEURL2Q9BR09 285 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 GINS4Q9BRT9 223 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 VCXQ9H320 206 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 RAB22AQ9UL26 194 aa6.96□□□□□ -1.3
HDDC3-204ENST00000559834 AK6Q9Y3D8 172 aaKnown RBP6.96□□□□□ -1.3
HDDC3-204ENST00000559834 TRBV6-7A0A0A0MS04 114 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 IZUMO1RA6ND01 250 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 SRRM4A7MD48 611 aaKnown RBP6.95□□□□□ -1.3
HDDC3-204ENST00000559834 TRBV12-3P01733 135 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 GSTT2P0CG29 244 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 GSTT2BP0CG30 244 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 HSMCR30P0CW71 290 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 APELAP0DMC3 54 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 GADD45AP24522 165 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 RHOGP84095 191 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 CD300EQ496F6 205 aaPredicted RBP6.95□□□□□ -1.3
HDDC3-204ENST00000559834 PLAC9Q5JTB6 97 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 LIPKQ5VXJ0 399 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 SLC25A42Q86VD7 318 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 NECAP1Q8NC96 275 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 OSR1Q8TAX0 266 aaPredicted RBP6.95□□□□□ -1.3
HDDC3-204ENST00000559834 SRSF12Q8WXF0 261 aaKnown RBP6.95□□□□□ -1.3
HDDC3-204ENST00000559834 RAB3CQ96E17 227 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 SPIN2AQ99865 258 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 SPIN2BQ9BPZ2 258 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 CABLES2Q9BTV7 478 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 PLEKHA3Q9HB20 300 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 AKIP1Q9NQ31 210 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 TECRQ9NZ01 308 aaKnown RBP6.95□□□□□ -1.3
HDDC3-204ENST00000559834 ADAM30Q9UKF2 790 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 V9GY05 133 aa6.95□□□□□ -1.3
HDDC3-204ENST00000559834 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.94□□□□□ -1.3
HDDC3-204ENST00000559834 TRBV9A0A0B4J1U6 114 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 ZNF785A8K8V0 405 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 OR11H12B2RN74 326 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 CRYZL1O95825 349 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 FCGR3AP08637 254 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 TALDO1P37837 337 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 KIR2DS2P43631 304 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 MAP2K4P45985 399 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 CLDN12P56749 244 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 DEFA5Q01523 94 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 EXOSC2Q13868 293 aaKnown RBP6.94□□□□□ -1.3
HDDC3-204ENST00000559834 GUCA2BQ16661 112 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 DEFB114Q30KQ6 69 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 IGSF11Q5DX21 431 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 TMEM91Q6ZNR0 172 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 SLC16A13Q7RTY0 426 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 TTC9CQ8N5M4 171 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 ACOT12Q8WYK0 555 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 GFI1Q99684 422 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 DCUN1D5Q9BTE7 237 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 ACOT13Q9NPJ3 140 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 LSM2Q9Y333 95 aaKnown RBP6.94□□□□□ -1.3
HDDC3-204ENST00000559834 PRELID3BQ9Y3B1 194 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 TPRKBQ9Y3C4 175 aa6.94□□□□□ -1.3
HDDC3-204ENST00000559834 METTL21EPA6NDL7 271 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 LGALS9O00182 355 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 BMPR1BO00238 502 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 PDCD5O14737 125 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 GGCTO75223 188 aaKnown RBP6.93□□□□□ -1.3
HDDC3-204ENST00000559834 CD7P09564 240 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 CALRP27797 417 aaKnown RBP6.93□□□□□ -1.3
HDDC3-204ENST00000559834 DUTP33316 252 aaKnown RBP6.93□□□□□ -1.3
HDDC3-204ENST00000559834 ARFRP1Q13795 201 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 ARL6IP1Q15041 203 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 CDK10Q15131 360 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 RCN1Q15293 331 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 SSX1Q16384 188 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 MRGPRG-AS1Q2M3A8 158 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 OGFRL1Q5TC84 451 aaPredicted RBP6.93□□□□□ -1.3
HDDC3-204ENST00000559834 IDO2Q6ZQW0 420 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 MMD2Q8IY49 270 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 DEFB125Q8N687 156 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 OR10R2Q8NGX6 335 aa6.93□□□□□ -1.3
HDDC3-204ENST00000559834 DDB2Q92466 427 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms