RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 IGHV4-59P01825 116 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 ANXA3P12429 323 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 RPA2P15927 270 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 F2RP25116 425 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 UBE2MP61081 183 aaKnown RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 DHODHQ02127 395 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 LY6EQ16553 131 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 PHLDA2Q53GA4 152 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 GLDNQ6ZMI3 551 aaPredicted RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 ZNF383Q8NA42 475 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 DRAXINQ8NBI3 349 aaPredicted RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 ENKURQ8TC29 256 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 EAF1Q96JC9 268 aaPredicted RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 RBM14Q96PK6 669 aaKnown RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 SLC25A33Q9BSK2 321 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 SLC2A9Q9NRM0 540 aa7.41□□□□□ -1.22
LDLR-210ENST00000559340 ANK3Q12955 4377 aaKnown RBP7.41□□□□□ -1.22
LDLR-210ENST00000559340 NCBP2LA6PVI3 153 aaKnown RBP7.4□□□□□ -1.22
LDLR-210ENST00000559340 LINC00473A8K010 186 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 FGF16O43320 207 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 TNFSF12O43508 249 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 SPDEFO95238 335 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 HPRT1P00492 218 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 RLN1P04808 185 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 SERPINE2P07093 398 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 RNASE1P07998 156 aaKnown RBP7.4□□□□□ -1.22
LDLR-210ENST00000559340 PAX6P26367 422 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 ERVK-16P61578 105 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 UBA52P62987 128 aaKnown RBP7.4□□□□□ -1.22
LDLR-210ENST00000559340 EIF4EBP1Q13541 118 aaPredicted RBP7.4□□□□□ -1.22
LDLR-210ENST00000559340 DCTN2Q13561 401 aaKnown RBP7.4□□□□□ -1.22
LDLR-210ENST00000559340 HNF4GQ14541 408 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 VMA21Q3ZAQ7 101 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 TMEM177Q53S58 311 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 TBC1D26Q86UD7 250 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 SPAG16Q8N0X2 631 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 CENPSQ8N2Z9 138 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 OR51H1Q8NH63 302 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 PIFOQ8TCI5 191 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 DDB2Q92466 427 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 RASL11BQ9BPW5 248 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 RTBDNQ9BSG5 229 aaPredicted RBP7.4□□□□□ -1.22
LDLR-210ENST00000559340 NPFFR1Q9GZQ6 430 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 PLEKHA2Q9HB19 425 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 TNFRSF19Q9NS68 423 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 MOB4Q9Y3A3 225 aa7.4□□□□□ -1.22
LDLR-210ENST00000559340 C3orf85A0A1B0GTC6 90 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 H0Y980 276 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 NBR2O15453 112 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 GPR137BO60478 399 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 CREBL2O60519 120 aaPredicted RBP7.39□□□□□ -1.23
LDLR-210ENST00000559340 CRYZL1O95825 349 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 TCRBP04435 133 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 NQO2P16083 231 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 AKR1C4P17516 323 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 PI3P19957 117 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 CD24P25063 80 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 SLC6A1P30531 599 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 CCR6P51684 374 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 RPL30P62888 115 aaKnown RBP7.39□□□□□ -1.23
LDLR-210ENST00000559340 SRPXP78539 464 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 PLGLAQ15195 96 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 MMDQ15546 238 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 TMEM128Q5BJH2 165 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 TMED4Q7Z7H5 227 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 NPBQ8NG41 125 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 VSTM2AQ8TAG5 236 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 C5orf30Q96GV9 206 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 HARBI1Q96MB7 349 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 CHIAQ9BZP6 476 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 PRSS22Q9GZN4 317 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 C5orf66Q9H5L9 145 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 RANBP3Q9H6Z4 567 aaPredicted RBP7.39□□□□□ -1.23
LDLR-210ENST00000559340 COMMD9Q9P000 198 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 NUBP2Q9Y5Y2 271 aa7.39□□□□□ -1.23
LDLR-210ENST00000559340 CRYM-AS1A6NIL9 109 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 RRHO14718 337 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 H2AFB2P0C5Z0 115 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 LPAR6P43657 344 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 RAB25P57735 213 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 PLET1Q6UQ28 207 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 SLC25A42Q86VD7 318 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 TMEM219Q86XT9 240 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 CADM3Q8N126 398 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 Q8N6K4 173 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 TEX45Q8NA69 505 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 DUSP18Q8NEJ0 188 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 MRGPRFQ96AM1 343 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 DUX5Q96PT3 197 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 ALX4Q9H161 411 aaPredicted RBP7.38□□□□□ -1.23
LDLR-210ENST00000559340 NAA60Q9H7X0 242 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 ESM1Q9NQ30 184 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 TBC1D24Q9ULP9 559 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 VSIG4Q9Y279 399 aa7.38□□□□□ -1.23
LDLR-210ENST00000559340 FAM181BA6NEQ2 426 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 KCNAB3O43448 404 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 ACTL6BO94805 426 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 NDUFA3O95167 84 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 PTTG1O95997 202 aa7.37□□□□□ -1.23
LDLR-210ENST00000559340 BTCP35070 178 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms