RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 HIST1H2BKO60814 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 PITX3O75364 302 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BJP06899 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 SRP19P09132 144 aaKnown RBP10.54□□□□□ -0.72
SHMT2-229ENST00000557348 SELLP14151 372 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BOP23527 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BBP33778 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BDP58876 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BCP62807 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST2H2BEQ16778 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-229ENST00000557348 AKR1C8PQ5T2L2 129 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 STUMQ69YW2 141 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 SELENOHQ8IZQ5 122 aaKnown RBP10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HSD17B11Q8NBQ5 300 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 MRGPRDQ8TDS7 321 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 CA5BP1Q8WTZ4 195 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BHQ93079 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 LSM10Q969L4 123 aaKnown RBP10.54□□□□□ -0.72
SHMT2-229ENST00000557348 PLPPR2Q96GM1 343 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 NEU1Q99519 415 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 P2RX4Q99571 388 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BNQ99877 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 HIST1H2BMQ99879 126 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 NDUFAF3Q9BU61 184 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 SAP30LQ9HAJ7 183 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 DYNLRB1Q9NP97 96 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 RNF115Q9Y4L5 304 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 CHD6Q8TD26 2715 aa10.54□□□□□ -0.72
SHMT2-229ENST00000557348 A0A1B0GU03 582 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 SHISA9B4DS77 424 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 CLDN34H7C241 214 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 YIF1AO95070 293 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 NHLH2Q02577 135 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 OR4D5Q8NGN0 318 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 OR1L1Q8NH94 360 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 LAMP3Q9UQV4 416 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 FAM90A27PA6NNH2 459 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 AKR1C3P42330 323 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 NKX2-1P43699 371 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-229ENST00000557348 NMSQ5H8A3 153 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 ZNF66Q6ZN08 573 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 TGIF2LYQ8IUE0 185 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 DRAM1Q8N682 238 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 OR13A1Q8NGR1 328 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 ACY3Q96HD9 319 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 TMEM68Q96MH6 324 aa10.53□□□□□ -0.72
SHMT2-229ENST00000557348 LSM5Q9Y4Y9 91 aaKnown RBP10.53□□□□□ -0.72
SHMT2-229ENST00000557348 PUS1Q9Y606 427 aaKnown RBP eCLIP10.53□□□□□ -0.72
SHMT2-229ENST00000557348 ZGRF1Q86YA3 2104 aa10.52□□□□□ -0.72
SHMT2-229ENST00000557348 HEATR1Q9H583 2144 aaKnown RBP10.52□□□□□ -0.72
SHMT2-229ENST00000557348 TRGV10A0A0A0MS01 117 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 TRAV39A0A0B4J263 110 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-229ENST00000557348 C3orf80F5H4A9 247 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 C15orf65H3BRN8 121 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 M0QZK8 103 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 F2RL2O00254 374 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 YPEL1O60688 119 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 GGCTO75223 188 aaKnown RBP10.52□□□□□ -0.73
SHMT2-229ENST00000557348 SCGB1D2O95969 90 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 CYB5R3P00387 301 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-229ENST00000557348 RAB7AP51149 207 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 EDDM3AQ14507 147 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 ZNF788Q6ZQV5 615 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 ZNF429Q86V71 674 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 TMEM183AQ8IXX5 376 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 ZNF808Q8N4W9 903 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-229ENST00000557348 Q8WTZ3 238 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 YPEL2Q96QA6 119 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 HSD17B10Q99714 261 aaKnown RBP10.52□□□□□ -0.73
SHMT2-229ENST00000557348 VAX2Q9UIW0 290 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 METRNQ9UJH8 293 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 FBXO7Q9Y3I1 522 aa10.52□□□□□ -0.73
SHMT2-229ENST00000557348 CELSR3Q9NYQ7 3312 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 RP1L1Q8IWN7 2480 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-229ENST00000557348 SHANK1Q9Y566 2161 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 A8MWP6 167 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 DFFBO76075 338 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 ADORA2A-AS1P86434 159 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 DMRTC2Q8IXT2 367 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-229ENST00000557348 OR51H1Q8NH63 302 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 FAM210BQ96KR6 192 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 OR2D2Q9H210 308 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 GNG12Q9UBI6 72 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 WSB1Q9Y6I7 421 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 TLN1Q9Y490 2541 aaKnown RBP10.51□□□□□ -0.73
SHMT2-229ENST00000557348 ITPR1Q14643 2758 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 LOC400499M0QZD8 3231 aa10.51□□□□□ -0.73
SHMT2-229ENST00000557348 IGHV3OR15-7A0A075B7D8 119 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 A0A1B0GV90 55 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 E7EQL1 145 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 PPP5D1E7EU14 171 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 TNFSF12O43508 249 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 SCAF4O95104 1147 aaKnown RBP10.5□□□□□ -0.73
SHMT2-229ENST00000557348 FSTL3O95633 263 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 IGLV2-14P01704 120 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 OR13C7P0DN81 318 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 DAOP14920 347 aa10.5□□□□□ -0.73
SHMT2-229ENST00000557348 EDDM3BP56851 147 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms