RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TRIM77I1YAP6 450 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 NDUFB6O95139 128 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 CRYZL1O95825 349 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 IGLV2-23P01705 113 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 F2RP25116 425 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 ECI1P42126 302 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 RPS16P62249 146 aaKnown RBP10.2□□□□□ -0.78
SHMT2-227ENST00000557269 BLCAPP62952 87 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 RTL8BQ17RB0 113 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 ABCA11PQ4W5N1 156 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 ZNF585BQ52M93 769 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 TMEM177Q53S58 311 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 SPAG16Q8N0X2 631 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-227ENST00000557269 C5orf56Q8N8D9 126 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 Q8N9W7 124 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 NPBQ8NG41 125 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 FLYWCH2Q96CP2 140 aaKnown RBP10.2□□□□□ -0.78
SHMT2-227ENST00000557269 ZNF486Q96H40 463 aaPredicted RBP10.2□□□□□ -0.78
SHMT2-227ENST00000557269 C1RLQ9NZP8 487 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 PRELID3BQ9Y3B1 194 aa10.2□□□□□ -0.78
SHMT2-227ENST00000557269 NCBP2LA6PVI3 153 aaKnown RBP10.19□□□□□ -0.78
SHMT2-227ENST00000557269 RRASP10301 218 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 TAGLNQ01995 201 aaKnown RBP10.19□□□□□ -0.78
SHMT2-227ENST00000557269 CATR1Q13166 79 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 PSG5Q15238 335 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 MMDQ15546 238 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 KRTAP24-1Q3LI83 254 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 SP6Q3SY56 376 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 C11orf88Q6PI97 169 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 LIAT1Q6ZQX7 453 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 TMED4Q7Z7H5 227 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 VKORC1L1Q8N0U8 176 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 OR4C13Q8NGP0 309 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 TP53RKQ96S44 253 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 SLC25A21Q9BQT8 299 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-227ENST00000557269 TPSG1Q9NRR2 321 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 C14orf166Q9Y224 244 aaKnown RBP10.19□□□□□ -0.78
SHMT2-227ENST00000557269 MOB4Q9Y3A3 225 aa10.19□□□□□ -0.78
SHMT2-227ENST00000557269 RNF212BA8MTL3 300 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 SHOXO15266 292 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 NBR2O15453 112 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 S1PR2O95136 353 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 NDUFA3O95167 84 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 CRYGBP07316 175 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 AKR1C4P17516 323 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 SLC6A1P30531 599 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 LPAR6P43657 344 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 RBMS2Q15434 407 aaKnown RBP10.18□□□□□ -0.78
SHMT2-227ENST00000557269 MRGPRG-AS1Q2M3A8 158 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 DHRS7BQ6IAN0 325 aaPredicted RBP10.18□□□□□ -0.78
SHMT2-227ENST00000557269 Q6ZSV7 163 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 C16orf82Q7Z2V1 217 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 FAM71E2Q8N5Q1 922 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 OR4S2Q8NH73 311 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 HARBI1Q96MB7 349 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 RNF5Q99942 180 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 FBXL15Q9H469 300 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 NAA60Q9H7X0 242 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 ZNF702PQ9H963 129 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 PRR13Q9NZ81 148 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 COPZ2Q9P299 210 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 SIGLEC9Q9Y336 463 aa10.18□□□□□ -0.78
SHMT2-227ENST00000557269 C3orf85A0A1B0GTC6 90 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 CRYM-AS1A6NIL9 109 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 LINC01548A6NM66 108 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 FCN1O00602 326 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 RRHO14718 337 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 RBFOX2O43251 390 aaKnown RBP eCLIP10.17□□□□□ -0.785e-15■■■■■ 33.3
SHMT2-227ENST00000557269 SLC25A17O43808 307 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 IGKV1-39P01597 117 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 IGKV1D-39P04432 117 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 TCRBP04435 133 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 RPA2P15927 270 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 S100GP29377 79 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 KIR2DS2P43631 304 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 SUPT4H1P63272 117 aaKnown RBP10.17□□□□□ -0.78
SHMT2-227ENST00000557269 CCDC71LQ8N9Z2 235 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 OR8H1Q8NGG4 311 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 OSR1Q8TAX0 266 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-227ENST00000557269 ZFAND2BQ8WV99 257 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 SCGB3A2Q96PL1 93 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 RAB18Q9NP72 206 aa10.17□□□□□ -0.78
SHMT2-227ENST00000557269 LIN7CQ9NUP9 197 aaKnown RBP10.17□□□□□ -0.78
SHMT2-227ENST00000557269 METTL1Q9UBP6 276 aaKnown RBP10.17□□□□□ -0.78
SHMT2-227ENST00000557269 TEX13DA0A0J9YY54 714 aaPredicted RBP10.16□□□□□ -0.78
SHMT2-227ENST00000557269 H0Y980 276 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 ARPC1BO15143 372 aaKnown RBP10.16□□□□□ -0.78
SHMT2-227ENST00000557269 FGF16O43320 207 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 HPRT1P00492 218 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 CRYBA1P05813 215 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 OR5AC1P0C628 307 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 SPNP16150 400 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 ANXA7P20073 488 aaKnown RBP10.16□□□□□ -0.78
SHMT2-227ENST00000557269 LGALS7P47929 136 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 PJVKQ0ZLH3 352 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 CBX3Q13185 183 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 C5orf64Q2M2E5 130 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 MZT2BQ6NZ67 158 aa10.16□□□□□ -0.78
SHMT2-227ENST00000557269 SSX9Q7RTT3 188 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms