RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TRGV5	A0A0B4J1U4	118 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005		J3QT63	122 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	SNAI2	O43623	268 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZIC3	O60481	467 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CA11	O75493	328 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CCL1	P22362	96 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	NMU	P48645	174 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	KRTCAP3	Q53RY4	240 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	GCSAML	Q5JQS6	135 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF664	Q8N3J9	261 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CPEB3	Q8NE35	698 aa	Known RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR8B3	Q8NGG8	313 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF524	Q96C55	264 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	TRBV6-7	A0A0A0MS04	114 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM210	A6NLX4	147 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005		H3BTX0	84 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ISLR	O14498	428 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	CGA	P01215	116 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	GCHFR	P30047	84 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	COMP	P49747	757 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	KCNMB1	Q16558	191 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	LHFPL4	Q7Z7J7	247 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	ABHD12	Q8N2K0	398 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PSMG3	Q9BT73	122 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	PHF7	Q9BWX1	381 aa	Predicted RBP	4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM191A	Q9H0A3	160 aa		4.24	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV3D-11	A0A0A0MRZ8	115 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	hCG_38984	A0A1B0GV85	526 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	WNT9B	O14905	357 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	CLDN14	O95500	239 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	REG1A	P05451	166 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	EPHA8	P29322	1005 aa	Predicted RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TNFSF10	P50591	281 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	NUBP1	P53384	320 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	IL11RA	Q14626	422 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	SSPN	Q14714	243 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	DEFB109B	Q30KR1	87 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF841	Q6ZN19	808 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	GTF2H5	Q6ZYL4	71 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	BCL2L2	Q92843	193 aa	Predicted RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	SAP30L	Q9HAJ7	183 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM140	Q9NV12	185 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	HSPB7	Q9UBY9	170 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMSB15B	A0A087X1C1	80 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	C17orf98	A8MV24	154 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	SSTR5	P35346	364 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	JOSD1	Q15040	202 aa	Predicted RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TWIST1	Q15672	202 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF324B	Q6AW86	544 aa	Predicted RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM251	Q8N6I4	163 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	MRPL37	Q9BZE1	423 aa	Known RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	RNASE7	Q9H1E1	156 aa	Known RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	DEPP	Q9NTK1	212 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A1B0GUS0	222 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	WIPF3	A6NGB9	483 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	NPIPB7	O75200	414 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	CDKN1A	P38936	164 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TDGF1P3	P51864	188 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	CLDN18	P56856	261 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	MRPS11	P82912	194 aa	Known RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	RPL24	P83731	157 aa	Known RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	MIR17HG	Q75NE6	70 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	FGFBP3	Q8TAT2	258 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	PLPPR1	Q8TBJ4	325 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	ARRDC1-AS1	Q9H2J1	176 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF207	O43670	478 aa	Known RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	MT-CO3	P00414	261 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	NPY1R	P25929	384 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	LHFPL1	Q86WI0	220 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	NEU1	Q99519	415 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	MS4A5	Q9H3V2	200 aa		4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	YTHDF2	Q9Y5A9	579 aa	Known RBP	4.23	□□□□□ -1.73
SYNE2-223	ENST00000557005	TNFAIP6	P98066	277 aa	Predicted RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SAXO1	Q8IYX7	474 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FADS6	Q8N9I5	356 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZBTB34	Q8NCN2	500 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR4F17	Q8NGA8	305 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	GTF3A	Q92664	365 aa	Known RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CYYR1	Q96J86	154 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	DERL1	Q9BUN8	251 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	UBE2Z	Q9H832	354 aa	Predicted RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	IL19	Q9UHD0	177 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	WIPI2	Q9Y4P8	454 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005		A6NDN8	102 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A10P	A6NDY2	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A18P	A6NE21	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A16P	A6NEW6	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A20P	A6NIJ5	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A8P	A6NJQ4	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A7P	A6NKC0	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A22P	A8MWA6	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A12P	A8MX19	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A5P	A8MXJ8	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A23P	A8MXZ1	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	RBFOX2	O43251	390 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A15P	P0C7V4	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A13P	P0C7W8	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM90A14P	P0C7W9	464 aa		4.22	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms