RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 NIPBLQ6KC79 2804 aaeCLIP11.22□□□□□ -0.61
VIPAS39-208ENST00000556412 SH2D7A6NKC9 451 aaPredicted RBP11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 SHOXO15266 292 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 RAMP3O60896 148 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 CNTFRP26992 372 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 F2RL1P55085 397 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 RBMS2Q15434 407 aaKnown RBP11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 CCDC71LQ8N9Z2 235 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 OR4C13Q8NGP0 309 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 OR4S2Q8NH73 311 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 HARBI1Q96MB7 349 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 RTBDNQ9BSG5 229 aaPredicted RBP11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 C5orf66Q9H5L9 145 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 GPR132Q9UNW8 380 aa11.21□□□□□ -0.61
VIPAS39-208ENST00000556412 TEX13DA0A0J9YY54 714 aaPredicted RBP11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 MPPED1O15442 326 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 AKR1C4P17516 323 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 BTCP35070 178 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 KIR2DS2P43631 304 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 PLGLAQ15195 96 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 MZT2BQ6NZ67 158 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 Q8N6K4 173 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 SLC25A21Q9BQT8 299 aaPredicted RBP11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 LIN7CQ9NUP9 197 aaKnown RBP11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 KIAA1456Q9P272 454 aa11.21□□□□□ -0.62
VIPAS39-208ENST00000556412 NBR2O15453 112 aa11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 F2RP25116 425 aa11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 ASAH1Q13510 395 aa11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 C9orf152Q5JTZ5 239 aa11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 ADAD2Q8NCV1 583 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 NPFFR1Q9GZQ6 430 aa11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 C1RLQ9NZP8 487 aa11.2□□□□□ -0.62
VIPAS39-208ENST00000556412 FAM240BA0A1B0GVZ2 78 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 NDUFB6O95139 128 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 BRWD1-AS2P59051 145 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 DEFA1P59665 94 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 DEFA3P59666 94 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 RND3P61587 244 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 SP6Q3SY56 376 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 ARSJQ5FYB0 599 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 C16orf82Q7Z2V1 217 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 OR8H1Q8NGG4 311 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 TSNAXQ99598 290 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 RASL11BQ9BPW5 248 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 FLVCR2Q9UPI3 526 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 C3orf85A0A1B0GTC6 90 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 M0QZK8 103 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 SLC25A17O43808 307 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 BLCAPP62952 87 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 TMEM177Q53S58 311 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 VKORC1L1Q8N0U8 176 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 C5orf56Q8N8D9 126 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 OSR1Q8TAX0 266 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 ENKURQ8TC29 256 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 CD300LFQ8TDQ1 290 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 CLCC1Q96S66 551 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 FBXL15Q9H469 300 aa11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 METTL1Q9UBP6 276 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-208ENST00000556412 CUBNO60494 3623 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 ARPC1BO15143 372 aaKnown RBP11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 S1PR2O95136 353 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 SERPINE2P07093 398 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 RPA2P15927 270 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 LPAR6P43657 344 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 LGALS7P47929 136 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 PSG5Q15238 335 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 TRIM16LQ309B1 348 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 C11orf88Q6PI97 169 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 SSX9Q7RTT3 188 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 SGPP2Q8IWX5 399 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 CENPSQ8N2Z9 138 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 Q8N9W7 124 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 TP53RKQ96S44 253 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 RNF5Q99942 180 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 NAA60Q9H7X0 242 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 PLSCR3Q9NRY6 295 aa11.18□□□□□ -0.62
VIPAS39-208ENST00000556412 SRRM4A7MD48 611 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 H0Y980 276 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 RRHO14718 337 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 FGF16O43320 207 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 HPRT1P00492 218 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 OR5AC1P0C628 307 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 VSIG10L2P0DP72 767 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 VAMP1P23763 118 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 SLC6A1P30531 599 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 VMA21Q3ZAQ7 101 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 ZFAND2BQ8WV99 257 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 TMEM230Q96A57 120 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 C20orf85Q9H1P6 137 aa11.17□□□□□ -0.62
VIPAS39-208ENST00000556412 TRAV6A0A075B6T7 132 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 CRYM-AS1A6NIL9 109 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 RBFOX2O43251 390 aaKnown RBP eCLIP11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 IGLV2-23P01705 113 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 TCRBP04435 133 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 AMY1AP04745 511 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 RAG2P55895 527 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 RIPPLY3P57055 190 aa11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 RPL15P61313 204 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-208ENST00000556412 RELBQ01201 579 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms