RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	MFAP4	P55083	255 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	XG	P55808	180 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	CRMP1	Q14194	572 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	IRF3	Q14653	427 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	ZNF829	Q3KNS6	432 aa	Predicted RBP	4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	METTL21C	Q5VZV1	264 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	VTCN1	Q7Z7D3	282 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	OR5T1	Q8NG75	326 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	FAM210B	Q96KR6	192 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	SPAG8	Q99932	426 aa	Predicted RBP	4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	PAIP2	Q9BPZ3	127 aa	Known RBP	4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	FAM103A1	Q9BTL3	118 aa	Known RBP	4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	MRO	Q9BYG7	248 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	NMNAT2	Q9BZQ4	307 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	PPIL3	Q9H2H8	161 aa	Known RBP	4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	FBXL15	Q9H469	300 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	RAB9B	Q9NP90	201 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	MED4	Q9NPJ6	270 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	FAM206A	Q9NX38	181 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	NUFIP1	Q9UHK0	495 aa	Known RBP	4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	ENPP4	Q9Y6X5	453 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686		V9GYS6	101 aa		4.16	□□□□□ -1.74
ATXN3-223	ENST00000553686	IGKV1-27	A0A075B6S5	117 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	IGKV3D-20	A0A0C4DH25	116 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686		A6NIN4	97 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686		E9PI62	339 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	FCN1	O00602	326 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	SNN	O75324	88 aa	Predicted RBP	4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	ZNF254	O75437	659 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	ZNF682	O95780	498 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	SSTR5	P35346	364 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	NUDT2	P50583	147 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	CMC4	P56277	68 aa	Predicted RBP	4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	MTCP1	P56278	107 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	TSPAN31	Q12999	210 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	FAM106A	Q4KMX7	169 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	PAN3	Q58A45	887 aa	Known RBP	4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	SAMD4B	Q5PRF9	694 aa	Known RBP	4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	ADAMTSL4-AS1	Q5T5F5	129 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	LINC01590	Q5TEZ4	76 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686		Q6P435	159 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	EPGN	Q6UW88	154 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	TCEANC	Q8N8B7	351 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	UXS1	Q8NBZ7	420 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	OR8J3	Q8NGG0	315 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	GNPDA2	Q8TDQ7	276 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	ARL11	Q969Q4	196 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	NICN1	Q9BSH3	213 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	INTS9	Q9NV88	658 aa	Known RBP	4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	ZNF446	Q9NWS9	450 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	LAMP5	Q9UJQ1	280 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	BAIAP2	Q9UQB8	552 aa		4.15	□□□□□ -1.75
ATXN3-223	ENST00000553686	TRBV4-1	A0A0J9YWV2	114 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	RIIAD1	A6NNX1	92 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686		H0YJX3	145 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	SLC22A1	O15245	554 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	ORC5	O43913	435 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	GGCT	O75223	188 aa	Known RBP	4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	CLU	P10909	449 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	PRKACB	P22694	351 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	NKX2-1	P43699	371 aa	Predicted RBP	4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	ACTR3	P61158	418 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	PAX5	Q02548	391 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	ATP5G2	Q06055	141 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	PDZK1IP1	Q13113	114 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	FXYD3	Q14802	87 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	UBE2V2	Q15819	145 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	ATAD3C	Q5T2N8	411 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	LIPK	Q5VXJ0	399 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	OR4A47	Q6IF82	309 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	FAM131A	Q6UXB0	335 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	ZNF767P	Q75MW2	155 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	GPHB5	Q86YW7	130 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	CCDC54	Q8NEL0	328 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	OR5B3	Q8NH48	314 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	GHSR	Q92847	366 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	MARC2	Q969Z3	335 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	CLCC1	Q96S66	551 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	RNF5	Q99942	180 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	CCDC28B	Q9BUN5	200 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	FAM107B	Q9H098	131 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	PARP12	Q9H0J9	701 aa	Known RBP	4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	KCNK15	Q9H427	330 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	MOB1A	Q9H8S9	216 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	PLCXD1	Q9NUJ7	323 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	GNG12	Q9UBI6	72 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	UBQLN2	Q9UHD9	624 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	EXOG	Q9Y2C4	368 aa	Known RBP	4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	TMED3	Q9Y3Q3	217 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	CDH10	Q9Y6N8	788 aa		4.14	□□□□□ -1.75
ATXN3-223	ENST00000553686	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	NBDY	A0A0U1RRE5	68 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	NDUFAF8	A1L188	74 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	ZNF320	A2RRD8	509 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	OR4C46	A6NHA9	309 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	FAM223B	A6NKX1	122 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	RBBP9	O75884	186 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	NPPA	P01160	153 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	IFNA5	P01569	189 aa		4.13	□□□□□ -1.75
ATXN3-223	ENST00000553686	TTR	P02766	147 aa		4.13	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms