RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 APOA2P02652 100 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 IGKV1D-39P04432 117 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 OR5AC1P0C628 307 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 P0C879 139 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 SLC25A6P12236 298 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 HNF1AP20823 631 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 BRS3P32247 399 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 LINC00205P59089 165 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 SSX2Q16385 188 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 RUSC1-AS1Q66K80 236 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 BRD3OSQ6XYD6 125 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 Q6YL49 198 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 TMED4Q7Z7H5 227 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 FAM219AQ8IW50 185 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 SPAG16Q8N0X2 631 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 TMEM86BQ8N661 226 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 NPBQ8NG41 125 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 OR8H1Q8NGG4 311 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 OR4S2Q8NH73 311 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 LSM10Q969L4 123 aaKnown RBP7.69□□□□□ -1.18
LIMA1-211ENST00000552338 SEC22AQ96IW7 307 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 MS4A7Q9GZW8 240 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-211ENST00000552338 YAE1D1Q9NRH1 226 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 SLC35D1Q9NTN3 355 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 CDC42EP3Q9UKI2 254 aa7.69□□□□□ -1.18
LIMA1-211ENST00000552338 A0A0A6YYJ9 748 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 TIMM23O14925 209 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 TNFSF12O43508 249 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 CREBL2O60519 120 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 ATG12O94817 140 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 SPDEFO95238 335 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 IGLV2-23P01705 113 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 HLA-AP01891 365 aaKnown RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 IGKV1-16P04430 117 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 CRYGBP07316 175 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 VDAC1P21796 283 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 SCGB2A2Q13296 93 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 RTL8BQ17RB0 113 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 ANKRD55Q3KP44 614 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 AARDQ4LEZ3 155 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 C4orf46Q504U0 113 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 CLEC9AQ6UXN8 241 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 C16orf82Q7Z2V1 217 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 PDZD9Q8IXQ8 264 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 SELENOHQ8IZQ5 122 aaKnown RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 PUSL1Q8N0Z8 303 aaKnown RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 LGI3Q8N145 548 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 DRAXINQ8NBI3 349 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 OR51H1Q8NH63 302 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 LHFPL5Q8TAF8 219 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 TCTEX1D2Q8WW35 142 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 RBPMSQ93062 196 aaKnown RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 FLYWCH2Q96CP2 140 aaKnown RBP7.68□□□□□ -1.18
LIMA1-211ENST00000552338 GPHA2Q96T91 129 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 PHB2Q99623 299 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 SMR3AQ99954 134 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 RAB18Q9NP72 206 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 HILPDAQ9Y5L2 63 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 HIVEP2P31629 2446 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 TLN2Q9Y4G6 2542 aa7.68□□□□□ -1.18
LIMA1-211ENST00000552338 MAP1AP78559 2803 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 A0A1W2PRD5 423 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 A0A1W2PRF3 423 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 A0A1W2PRM7 423 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 SRRM4A7MD48 611 aaKnown RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 RAMP3O60896 148 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 FCGR3BO75015 233 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 MOSP00540 346 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 HRASP01112 189 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 FAM106CPP0CH98 169 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 NQO2P16083 231 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 LPAR6P43657 344 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 IER3P46695 156 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 REG1BP48304 166 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 SRSF4Q08170 494 aaKnown RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 LRRC75BQ2VPJ9 315 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 DEFB112Q30KQ8 113 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 NMSQ5H8A3 153 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 MOB3BQ86TA1 216 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 BCL6BQ8N143 479 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 C12orf45Q8N5I9 185 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 TEX45Q8NA69 505 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 OR2T10Q8NGZ9 312 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 OR4A5Q8NH83 315 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 OR5R1Q8NH85 324 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 COQ8AQ8NI60 647 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 EAF1Q96JC9 268 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 ZNF48Q96MX3 618 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 SEC22CQ9BRL7 303 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 PLSCR3Q9NRY6 295 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 COA4Q9NYJ1 87 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 BET1LQ9NYM9 111 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 FAM96BQ9Y3D0 163 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 TMED3Q9Y3Q3 217 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 ALG5Q9Y673 324 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 POMT1Q9Y6A1 747 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 TET2Q6N021 2002 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-211ENST00000552338 F8P00451 2351 aa7.67□□□□□ -1.18
LIMA1-211ENST00000552338 ZFHX3Q15911 3703 aa7.66□□□□□ -1.18
LIMA1-211ENST00000552338 ANK3Q12955 4377 aaKnown RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms