RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 FGF1P05230 155 aa7.55□□□□□ -1.2
VPS13D-212ENST00000543766 HOXD9P28356 352 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-212ENST00000543766 NOXRED1Q6NXP6 359 aa7.55□□□□□ -1.2
VPS13D-212ENST00000543766 WFDC3Q8IUB2 231 aa7.55□□□□□ -1.2
VPS13D-212ENST00000543766 C1orf174Q8IYL3 243 aa7.55□□□□□ -1.2
VPS13D-212ENST00000543766 DDB2Q92466 427 aa7.55□□□□□ -1.2
VPS13D-212ENST00000543766 BORCS7Q96B45 105 aa7.55□□□□□ -1.2
VPS13D-212ENST00000543766 A0A1W2PRF3 423 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 A0A1W2PRM7 423 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 OR1D5P58170 312 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 PRDX4Q13162 271 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 PTPRNQ16849 979 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 TMEM97Q5BJF2 176 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 OR2M3Q8NG83 312 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 SLC37A2Q8TED4 501 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 C20orf173Q96LM9 149 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF681Q96N22 645 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 HILPDAQ9Y5L2 63 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 NUP210LQ5VU65 1888 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 FAM24AA6NFZ4 105 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 MSGN1A6NI15 193 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 GABARAPH6UMI1 98 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 CD5LO43866 347 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 OR2H2O95918 312 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 FOXG1P55316 489 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-212ENST00000543766 NDUFV3P56181 108 aaKnown RBP7.54□□□□□ -1.2
VPS13D-212ENST00000543766 SP6Q3SY56 376 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 STUMQ69YW2 141 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 SLC35F2Q8IXU6 374 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 PIANPQ8IYJ0 282 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF433Q8N7K0 673 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-212ENST00000543766 ACOT4Q8N9L9 421 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 B3GALNT2Q8NCR0 500 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 TMEM30AQ9NV96 361 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 PSG2P11465 335 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 GLIPR1P48060 266 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 TAS2R19P59542 299 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 C9orf57Q5W0N0 161 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 EXOC3-AS1Q8N2X6 119 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 DEFB125Q8N687 156 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 WFDC11Q8NEX6 87 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 LMX1AQ8TE12 382 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 SLC25A38Q96DW6 304 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 COQ2Q96H96 371 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 Q96MF0 132 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 SCGB3A2Q96PL1 93 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 HEBP2Q9Y5Z4 205 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 COL6A3P12111 3177 aa7.54□□□□□ -1.2
VPS13D-212ENST00000543766 KIAA2026Q5HYC2 2103 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 TRAV1-2A0A0B4J238 106 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 NPIPB11E5RHQ5 1161 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 CD3DP04234 171 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF728P0DKX0 622 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 SRIP30626 198 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 FUT5Q11128 374 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 EDDM3AQ14507 147 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 OTPQ5XKR4 325 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 TBC1D26Q86UD7 250 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 TMEM229BQ8NBD8 167 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 APCDD1LQ8NCL9 501 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF502Q8TBZ5 544 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 BRK1Q8WUW1 75 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 SUSD6Q92537 303 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 PRSS50Q9UI38 385 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF840PA6NDX5 716 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 DUS4LO95620 317 aaKnown RBP7.53□□□□□ -1.2
VPS13D-212ENST00000543766 UBE2NP61088 152 aaKnown RBP7.53□□□□□ -1.2
VPS13D-212ENST00000543766 SLC38A11Q08AI6 406 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 MSMO1Q15800 293 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 LINC01561Q8N1V8 128 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 KIR2DL4Q99706 377 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 HEATR1Q9H583 2144 aaKnown RBP7.53□□□□□ -1.2
VPS13D-212ENST00000543766 MYO16Q9Y6X6 1858 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 PLPP2O43688 288 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 ATP1B1P05026 303 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 THBDP07204 575 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 FMODQ06828 376 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 MFAP5Q13361 173 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 GUSBP1Q15486 140 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 GLYATL3Q5SZD4 288 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 Q6ZUT4 128 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 Q6ZWC4 215 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 ZNF101Q8IZC7 436 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 MORN4Q8NDC4 146 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 OR6K2Q8NGY2 324 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 ARPC1AQ92747 370 aa7.53□□□□□ -1.2
VPS13D-212ENST00000543766 EFNA2O43921 213 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 SMIM10L2AP0DMW4 78 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 SMIM10L2BP0DMW5 78 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 FAM27D1Q5T7N8 215 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 LRRC25Q8N386 305 aaPredicted RBP7.52□□□□□ -1.21
VPS13D-212ENST00000543766 PLA2G12AQ9BZM1 189 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 TRAPPC1Q9Y5R8 145 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 IGHV2-26A0A0B4J1V2 119 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 TMEM212A6NML5 194 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 TM4SF5O14894 197 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 MS4A18Q3C1V0 323 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 ALG10Q5BKT4 473 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 SPANXA1Q9NS26 97 aa7.52□□□□□ -1.21
VPS13D-212ENST00000543766 BMPR1BO00238 502 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms