RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ASAH1Q13510 395 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 RBMS2Q15434 407 aaKnown RBP13.68□□□□□ -0.22
LIG1-204ENST00000542460 TBC1D26Q86UD7 250 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 CCDC71LQ8N9Z2 235 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 POC5Q8NA72 575 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 OR51H1Q8NH63 302 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 RITA1Q96K30 269 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 RTBDNQ9BSG5 229 aaPredicted RBP13.68□□□□□ -0.22
LIG1-204ENST00000542460 C5orf66Q9H5L9 145 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 COPZ2Q9P299 210 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 TBC1D24Q9ULP9 559 aa13.68□□□□□ -0.22
LIG1-204ENST00000542460 FAM181BA6NEQ2 426 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 MPPED1O15442 326 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 CHST1O43916 411 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 F2RP25116 425 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 BRWD1-AS2P59051 145 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 RPS16P62249 146 aaKnown RBP13.67□□□□□ -0.22
LIG1-204ENST00000542460 DCTN2Q13561 401 aaKnown RBP13.67□□□□□ -0.22
LIG1-204ENST00000542460 TMEM177Q53S58 311 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 OR2B11Q5JQS5 317 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 DHRS7BQ6IAN0 325 aaPredicted RBP13.67□□□□□ -0.22
LIG1-204ENST00000542460 MZT2BQ6NZ67 158 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 SPAG16Q8N0X2 631 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 TCTEX1D1Q8N7M0 179 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 OR4S2Q8NH73 311 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 CD300LFQ8TDQ1 290 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 MDFIQ99750 246 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 LIN7CQ9NUP9 197 aaKnown RBP13.67□□□□□ -0.22
LIG1-204ENST00000542460 C1RLQ9NZP8 487 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 VSIG4Q9Y279 399 aa13.67□□□□□ -0.22
LIG1-204ENST00000542460 NCBP2LA6PVI3 153 aaKnown RBP13.66□□□□□ -0.22
LIG1-204ENST00000542460 M0QZK8 103 aa13.66□□□□□ -0.22
LIG1-204ENST00000542460 RBFOX2O43251 390 aaKnown RBP eCLIP13.66□□□□□ -0.222e-6■□□□□ 9.8
LIG1-204ENST00000542460 CRYBA1P05813 215 aa13.66□□□□□ -0.22
LIG1-204ENST00000542460 LGALS7P47929 136 aa13.66□□□□□ -0.22
LIG1-204ENST00000542460 SRSF2Q01130 221 aaKnown RBP13.66□□□□□ -0.22
LIG1-204ENST00000542460 NPBQ8NG41 125 aa13.66□□□□□ -0.22
LIG1-204ENST00000542460 PLSCR3Q9NRY6 295 aa13.66□□□□□ -0.22
LIG1-204ENST00000542460 MOB4Q9Y3A3 225 aa13.66□□□□□ -0.22
LIG1-204ENST00000542460 FGF16O43320 207 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 NDUFB6O95139 128 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 CRYZL1O95825 349 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 SLC6A1P30531 599 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 F2RL1P55085 397 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 DEFA1P59665 94 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 DEFA3P59666 94 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 MMDQ15546 238 aa13.65□□□□□ -0.22
LIG1-204ENST00000542460 OSR1Q8TAX0 266 aaPredicted RBP13.65□□□□□ -0.22
LIG1-204ENST00000542460 TSNAXQ99598 290 aaKnown RBP13.65□□□□□ -0.22
LIG1-204ENST00000542460 SHOXO15266 292 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 NBR2O15453 112 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 RAMP3O60896 148 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 PEX14O75381 377 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 FBN1P35555 2871 aaKnown RBP13.64□□□□□ -0.23
LIG1-204ENST00000542460 HARBI1Q96MB7 349 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 NPFFR1Q9GZQ6 430 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 FAM212BQ9NTI7 297 aaPredicted RBP13.64□□□□□ -0.23
LIG1-204ENST00000542460 KIAA1456Q9P272 454 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 TEX13DA0A0J9YY54 714 aaPredicted RBP13.64□□□□□ -0.23
LIG1-204ENST00000542460 C3orf85A0A1B0GTC6 90 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 B3GALNT1O75752 331 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 HPRT1P00492 218 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 CNTFRP26992 372 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 C11orf88Q6PI97 169 aa13.64□□□□□ -0.23
LIG1-204ENST00000542460 ADAD2Q8NCV1 583 aaKnown RBP13.64□□□□□ -0.23
LIG1-204ENST00000542460 FAM240BA0A1B0GVZ2 78 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 CRYM-AS1A6NIL9 109 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 NDUFA3O95167 84 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 SPDEFO95238 335 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 AMY1AP04745 511 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 AKR1C4P17516 323 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 PSG5Q15238 335 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 TMED4Q7Z7H5 227 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 SGPP2Q8IWX5 399 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 FAM71E2Q8N5Q1 922 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 C5orf56Q8N8D9 126 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 Q8N9W7 124 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 RASL11BQ9BPW5 248 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 AIFM2Q9BRQ8 373 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 NAA60Q9H7X0 242 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 PLEKHA2Q9HB19 425 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 PALMDQ9NP74 551 aa13.63□□□□□ -0.23
LIG1-204ENST00000542460 SRRM4A7MD48 611 aaKnown RBP13.62□□□□□ -0.23
LIG1-204ENST00000542460 H0Y980 276 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 RRHO14718 337 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 HRASP01112 189 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 IGLV2-23P01705 113 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 TCRBP04435 133 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 VSIG10L2P0DP72 767 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 LPAR6P43657 344 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 BLCAPP62952 87 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 ZNF585BQ52M93 769 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 CENPSQ8N2Z9 138 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 TMEM230Q96A57 120 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 RANBP3Q9H6Z4 567 aaPredicted RBP13.62□□□□□ -0.23
LIG1-204ENST00000542460 KCNIP3Q9Y2W7 256 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 ATRQ13535 2644 aa13.62□□□□□ -0.23
LIG1-204ENST00000542460 SERPINE2P07093 398 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 TAS2R31P59538 309 aa13.61□□□□□ -0.23
LIG1-204ENST00000542460 C5orf64Q2M2E5 130 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms