RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 REG1AP05451 166 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 VKORC1L1Q8N0U8 176 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 OR4C12Q96R67 309 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 SEMA5BQ9P283 1151 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 DEDDO75618 318 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 ZNF735P0CB33 412 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 ACACAQ13085 2346 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 TRAV30A0A087WSZ9 112 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 C7orf66A4D0T2 115 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 MFNGO00587 321 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 LAIR2Q6ISS4 152 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 MRPL37Q9BZE1 423 aaKnown RBP11.97□□□□□ -0.49
USP3-204ENST00000540797 C12orf77C9JDV5 145 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 TIMP3P35625 211 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 HIST1H3AP68431 136 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 RUNX1Q01196 453 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 Q0VFX4 171 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 RPL39P5Q59GN2 51 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 OR10J6PQ8NGY7 276 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 MSRB2Q9Y3D2 182 aa11.97□□□□□ -0.49
USP3-204ENST00000540797 SUMO1P63165 101 aaKnown RBP11.96□□□□□ -0.49
USP3-204ENST00000540797 SERF2P84101 59 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 OR5AC2Q9NZP5 309 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 FAM90A26D6RGX4 464 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 PLAUP00749 431 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 PF4P02776 101 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 FOXF2Q12947 444 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 RIGQ13278 110 aa11.96□□□□□ -0.49
USP3-204ENST00000540797 KCNAB3O43448 404 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 ZNF345Q14585 488 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 TMEM78Q5T7P6 136 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 PRNTQ86SH4 94 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 LDLRAD3Q86YD5 345 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 C9orf62Q8N4C0 152 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 ZNF738Q8NE65 137 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 TCF19Q9Y242 345 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 NPIPB7O75200 414 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 MGPP08493 103 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 LGALSLQ3ZCW2 172 aaPredicted RBP11.96□□□□□ -0.5
USP3-204ENST00000540797 BMPERQ8N8U9 685 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 SRD5A3Q9H8P0 318 aa11.96□□□□□ -0.5
USP3-204ENST00000540797 TMSB15BA0A087X1C1 80 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 TCAPO15273 167 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 TNFRSF9Q07011 255 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 DPPA3Q6W0C5 159 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 FAM90A1Q86YD7 464 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 FAM210BQ96KR6 192 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 COL4A6Q14031 1691 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 FCGR2BP31994 310 aaPredicted RBP11.95□□□□□ -0.5
USP3-204ENST00000540797 MEF2CQ06413 473 aaPredicted RBP11.95□□□□□ -0.5
USP3-204ENST00000540797 CD300CQ08708 224 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 SRSF6Q13247 344 aaKnown RBP11.95□□□□□ -0.5
USP3-204ENST00000540797 RNFT1Q5M7Z0 435 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 AUP1Q9Y679 476 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 UCP3P55916 312 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 IZUMO4Q1ZYL8 232 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 MRPL30Q8TCC3 161 aaKnown RBP11.95□□□□□ -0.5
USP3-204ENST00000540797 EEF1AKMT3Q96AZ1 226 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 C5orf66Q9H5L9 145 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 IGHV1-18A0A0C4DH31 117 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 RTN4RL2Q86UN3 420 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 BPIFA4PQ86YQ2 179 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 FAM24BQ8N5W8 94 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 OR13A1Q8NGR1 328 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 IL22RA2Q969J5 263 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 ANAPC16Q96DE5 110 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 WBP1Q96G27 269 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 NIT2Q9NQR4 276 aa11.95□□□□□ -0.5
USP3-204ENST00000540797 GNLYP22749 145 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 GBGT1Q8N5D6 347 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 RGP1Q92546 391 aaPredicted RBP11.94□□□□□ -0.5
USP3-204ENST00000540797 RSG1Q9BU20 258 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 NPDC1Q9NQX5 325 aaPredicted RBP11.94□□□□□ -0.5
USP3-204ENST00000540797 IL36RNQ9UBH0 155 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 KBTBD11-OT1A0A1B0GTJ5 212 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 TMEM56-RWDD3S4R434 201 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 THBDP07204 575 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 TMEM204Q9BSN7 226 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 TM2D1Q9BX74 207 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 NEUROG3Q9Y4Z2 214 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 ZSWIM8A7E2V4 1837 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 ALPK2Q86TB3 2170 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 MFSD2BA6NFX1 497 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 IL18BPO95998 194 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 SEC11CQ9BY50 192 aa11.94□□□□□ -0.5
USP3-204ENST00000540797 A0A1B0GTI1 187 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 LYPD3O95274 346 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 FAM74A3Q4VXF1 159 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 ZCCHC24Q8N2G6 241 aaKnown RBP11.93□□□□□ -0.5
USP3-204ENST00000540797 OR5AU1Q8NGC0 362 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 ZNF318Q5VUA4 2279 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 CSN3P07498 182 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 PGA5P0DJD9 388 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 MIC13Q5XKP0 118 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 HSD17B13Q7Z5P4 300 aaPredicted RBP11.93□□□□□ -0.5
USP3-204ENST00000540797 PARD6AQ9NPB6 346 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 IFITM3Q01628 133 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 ZNF146Q15072 292 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 GGNQ86UU5 652 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 GPR179Q6PRD1 2367 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms