RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LINC00696Q6ZRV3 163 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 MDP1Q86V88 176 aa9.45□□□□□ -0.9
SYNE1-237ENST00000539504 A6NNC1 897 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 C12orf77C9JDV5 145 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 HAND1O96004 215 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 TFF1P04155 84 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 CD1BP29016 333 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 ABHD17BQ5VST6 288 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 OR2J1Q9GZK6 312 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 OBP2BQ9NPH6 170 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 HEYLQ9NQ87 328 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-237ENST00000539504 KNTC1P50748 2209 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 IGKV3D-15A0A087WSY6 115 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 IGHEP01854 428 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 HBZP02008 142 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 TPPP2P59282 170 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 HOXA4Q00056 320 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-237ENST00000539504 Q8IYB0 196 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 OR10G8Q8NGN5 311 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM68Q96MH6 324 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 PSG11Q9UQ72 335 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 PXMP4Q9Y6I8 212 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 MED12LQ86YW9 2145 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 PATE3B3GLJ2 98 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 K7ESF4 209 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 CD82P27701 267 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 LHX2P50458 406 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 RPL15P61313 204 aaKnown RBP9.44□□□□□ -0.9
SYNE1-237ENST00000539504 OR2M7Q8NG81 312 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 ZCCHC14Q8WYQ9 949 aaKnown RBP9.44□□□□□ -0.9
SYNE1-237ENST00000539504 HSPB9Q9BQS6 159 aa9.44□□□□□ -0.9
SYNE1-237ENST00000539504 FAM103A1Q9BTL3 118 aaKnown RBP9.44□□□□□ -0.9
SYNE1-237ENST00000539504 UBE2ZQ9H832 354 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-237ENST00000539504 RBFOX2O43251 390 aaKnown RBP eCLIP9.43□□□□□ -0.9
SYNE1-237ENST00000539504 ARL14EPLP0DKL9 152 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 CRISP2P16562 243 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 TDGF1P3P51864 188 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 SOX8P57073 446 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 ZNF826PQ6ZT77 177 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 WDR86Q86TI4 376 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 VN1R17PQ8TDU5 208 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 FAM173AQ9BQD7 235 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 WNT9BO14905 357 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 PSPNO60542 156 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 CLDN14O95500 239 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 CLDN18P56856 261 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 ALKBH6Q3KRA9 238 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 NANOS1Q8WY41 292 aaKnown RBP9.43□□□□□ -0.9
SYNE1-237ENST00000539504 QTRT1Q9BXR0 403 aaKnown RBP9.43□□□□□ -0.9
SYNE1-237ENST00000539504 DOCK10Q96BY6 2186 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 SCO2A0A1W2PP80 73 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 SLC17A3O00476 420 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 SPINK4O60575 86 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 NEURL1O76050 574 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 WNT2P09544 360 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 TBC1D28Q2M2D7 210 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 DCAF12Q5T6F0 453 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 PRAMEF5Q5TYX0 476 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 PRAMEF6Q5VXH4 476 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 ZBTB34Q8NCN2 500 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 SSMEM1Q8WWF3 244 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 KCNIP2Q9NS61 270 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 ELOVL5Q9NYP7 299 aa9.43□□□□□ -0.9
SYNE1-237ENST00000539504 PMS2P5A8MQ11 134 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 RAB29O14966 203 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 MLNRO43193 412 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 RPLP1P05386 114 aaKnown RBP9.42□□□□□ -0.9
SYNE1-237ENST00000539504 GTF3C1Q12789 2109 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 MIC13Q5XKP0 118 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 CT55Q8WUE5 264 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 TAAR6Q96RI8 345 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 MARCH11A6NNE9 402 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 FCN1O00602 326 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 FCGR3BO75015 233 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 IGHV3-13P01766 116 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 IGHV3-7P01780 117 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 MRPL49Q13405 166 aaKnown RBP9.42□□□□□ -0.9
SYNE1-237ENST00000539504 EDDM3AQ14507 147 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 OR4A16Q8NH70 328 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 R3HDM4Q96D70 268 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 VAMP8Q9BV40 100 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 ZNF703Q9H7S9 590 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-237ENST00000539504 MBNL3Q9NUK0 354 aaKnown RBP9.42□□□□□ -0.9
SYNE1-237ENST00000539504 TMEM106BQ9NUM4 274 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 SSTR5P35346 364 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 DUSP3P51452 185 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-237ENST00000539504 C5orf30Q96GV9 206 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 GOLT1BQ9Y3E0 138 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 SIT1Q9Y3P8 196 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 WIPI2Q9Y4P8 454 aa9.42□□□□□ -0.9
SYNE1-237ENST00000539504 CEP192Q8TEP8 1941 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 CELA3BP08861 270 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 CD99P14209 185 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 IER3P46695 156 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 KRTDAPP60985 99 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 FOXL1Q12952 345 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 TDRG1Q3Y452 100 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 OCC1Q8TAD7 63 aa9.41□□□□□ -0.9
SYNE1-237ENST00000539504 MRPL18Q9H0U6 180 aaKnown RBP9.41□□□□□ -0.9
SYNE1-237ENST00000539504 LOXL2Q9Y4K0 774 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms