RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 FRZBQ92765 325 aa13.35□□□□□ -0.27
CHMP1A-202ENST00000535997 IGHV1-18A0A0C4DH31 117 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 HMGB3O15347 200 aaKnown RBP13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 DUTP33316 252 aaKnown RBP13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 BSXQ3C1V8 233 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 R3HDM4Q96D70 268 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 INTS1Q8N201 2190 aaKnown RBP13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 PHOX2AO14813 284 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 SOX15O60248 233 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 HPRT1P00492 218 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 CFHR2P36980 270 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 GPR12P47775 334 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 TFF3Q07654 80 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 ADIRFQ15847 76 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 CR1LQ2VPA4 569 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 DIRC2Q96SL1 478 aa13.34□□□□□ -0.27
CHMP1A-202ENST00000535997 SRRM5B3KS81 715 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PROP1O75360 226 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 TNFSF13O75888 250 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PFN1P07737 140 aaKnown RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 ACOT6Q3I5F7 207 aaPredicted RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 MORN2Q502X0 79 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PYY3Q5JQD4 70 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 OR10A7Q8NGE5 316 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PPP1R35Q8TAP8 253 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 STARD4Q96DR4 205 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 SSX3Q99909 188 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PYGO2Q9BRQ0 406 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 DCTN5Q9BTE1 182 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 JPT1Q9UK76 154 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 DSPP15924 2871 aaKnown RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 C15orf62A8K5M9 175 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 YPEL1O60688 119 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 CD1BP29016 333 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 RPL23P62829 140 aaKnown RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 RPP30P78346 268 aaKnown RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 EDDM3AQ14507 147 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 HIST3H2BBQ8N257 126 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 OR2Z1Q8NG97 314 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 OR4F5Q8NH21 305 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 RPUSD4Q96CM3 377 aaKnown RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 SNX22Q96L94 193 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 YPEL2Q96QA6 119 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 OR4F4Q96R69 305 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 QTRT1Q9BXR0 403 aaKnown RBP13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PARLQ9H300 379 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 GNG12Q9UBI6 72 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 DKK4Q9UBT3 224 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PROCRQ9UNN8 238 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 PTPRBP23467 1997 aa13.33□□□□□ -0.28
CHMP1A-202ENST00000535997 IGKV1D-17A0A075B6S4 117 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 SMCO3A2RU48 225 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 MGST3O14880 152 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 CGAP01215 116 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 SOD3P08294 240 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 SPCS3P61009 180 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 TMEM249Q2WGJ8 235 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 BHLHA15Q7RTS1 189 aaPredicted RBP13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 SRD5A3Q9H8P0 318 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 WDR83OSQ9Y284 106 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 DMRT1Q9Y5R6 373 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 RBFOX2O43251 390 aaKnown RBP eCLIP13.32□□□□□ -0.284e-7■□□□□ 8.3
CHMP1A-202ENST00000535997 FCGR3BO75015 233 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 OR9G9P0C7N8 305 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 RPS16P62249 146 aaKnown RBP13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 SRSF6Q13247 344 aaKnown RBP13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 SPINK9Q5DT21 86 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 PIP4P1Q86T03 277 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 OR51G1Q8NGK1 321 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 OR52E5Q8NH55 327 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 GPR61Q9BZJ8 451 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 OR6C3Q9NZP0 311 aa13.32□□□□□ -0.28
CHMP1A-202ENST00000535997 MPDU1O75352 247 aa13.31□□□□□ -0.28
CHMP1A-202ENST00000535997 C16orf82Q7Z2V1 217 aa13.31□□□□□ -0.28
CHMP1A-202ENST00000535997 Q8N7P7 452 aa13.31□□□□□ -0.28
CHMP1A-202ENST00000535997 OR10D4PQ8NGN7 298 aa13.31□□□□□ -0.28
CHMP1A-202ENST00000535997 OPN3Q9H1Y3 402 aaPredicted RBP13.31□□□□□ -0.28
CHMP1A-202ENST00000535997 SLC25A15Q9Y619 301 aa13.31□□□□□ -0.28
CHMP1A-202ENST00000535997 PAGE4O60829 102 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 VENTXO95231 258 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 PLA2G5P39877 138 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 CDC34P49427 236 aaPredicted RBP13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 LTC4SQ16873 150 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 PDLIM3Q53GG5 364 aaPredicted RBP13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 GFI1BQ5VTD9 330 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 TGIF2LYQ8IUE0 185 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 OR4A16Q8NH70 328 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 GATAD1Q8WUU5 269 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 RAB1CQ92928 201 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 ANAPC16Q96DE5 110 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 NEIL1Q96FI4 390 aaPredicted RBP13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 ASCL3Q9NQ33 180 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 ZMAT5Q9UDW3 170 aaKnown RBP13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 DUSP13Q9UII6 198 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 PITPNC1Q9UKF7 332 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 H7BYZ3 331 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 F2RL2O00254 374 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 EGR1P18146 543 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 C4orf17Q53FE4 359 aa13.3□□□□□ -0.28
CHMP1A-202ENST00000535997 OR5B12Q96R08 314 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms