RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RBKSQ9H477 322 aa16.98■□□□□ 0.31
VPS28-209ENST00000528142 SPTBN1Q01082 2364 aaKnown RBP16.97■□□□□ 0.31
VPS28-209ENST00000528142 FLNCQ14315 2725 aa16.97■□□□□ 0.31
VPS28-209ENST00000528142 THBS3P49746 956 aa16.97■□□□□ 0.31
VPS28-209ENST00000528142 ZNF266Q14584 549 aa16.97■□□□□ 0.31
VPS28-209ENST00000528142 ZNF841Q6ZN19 808 aa16.97■□□□□ 0.31
VPS28-209ENST00000528142 ZNF705EA8MWA4 302 aaPredicted RBP16.96■□□□□ 0.31
VPS28-209ENST00000528142 RNF224P0DH78 156 aa16.96■□□□□ 0.31
VPS28-209ENST00000528142 AARDQ4LEZ3 155 aa16.96■□□□□ 0.31
VPS28-209ENST00000528142 TMEM217Q8N7C4 229 aa16.96■□□□□ 0.31
VPS28-209ENST00000528142 ADTRPQ96IZ2 230 aa16.96■□□□□ 0.31
VPS28-209ENST00000528142 ZNRD1Q9P1U0 126 aa16.96■□□□□ 0.31
VPS28-209ENST00000528142 FAM90A9PA6NNJ1 464 aa16.96■□□□□ 0.3
VPS28-209ENST00000528142 C19orf84I3L1E1 186 aa16.96■□□□□ 0.3
VPS28-209ENST00000528142 MED6O75586 246 aa16.96■□□□□ 0.3
VPS28-209ENST00000528142 OR9G9P0C7N8 305 aa16.96■□□□□ 0.3
VPS28-209ENST00000528142 STX12Q86Y82 276 aa16.96■□□□□ 0.3
VPS28-209ENST00000528142 TRBV23-1A0A0A0MS06 115 aa16.95■□□□□ 0.3
VPS28-209ENST00000528142 ARHGDIBP52566 201 aa16.95■□□□□ 0.3
VPS28-209ENST00000528142 TMEM267Q0VDI3 215 aaPredicted RBP16.95■□□□□ 0.3
VPS28-209ENST00000528142 C11orf42Q8N5U0 333 aa16.95■□□□□ 0.3
VPS28-209ENST00000528142 HSD17B11Q8NBQ5 300 aa16.95■□□□□ 0.3
VPS28-209ENST00000528142 OR4S2Q8NH73 311 aa16.95■□□□□ 0.3
VPS28-209ENST00000528142 NQO2P16083 231 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 C8orf31Q8N9H6 132 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 ZNF596Q8TC21 504 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 NEU4Q8WWR8 484 aaPredicted RBP16.94■□□□□ 0.3
VPS28-209ENST00000528142 MARC2Q969Z3 335 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 ATP5SQ99766 215 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 SH3BGRL3Q9H299 93 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 CHD6Q8TD26 2715 aa16.94■□□□□ 0.3
VPS28-209ENST00000528142 LY6HO94772 140 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 CT45A6P0DMU7 189 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 CT45A5P0DMU8 189 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 CT45A7P0DMV0 189 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 IGFBP2P18065 325 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 ARL16Q0P5N6 197 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 AVPI1Q5T686 147 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 ZNF833PQ6ZTB9 187 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 HAPLN4Q86UW8 402 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 STPG2Q8N412 459 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 SESN1Q9Y6P5 492 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 A0A087X0M5 115 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 A0A1B0GX30 115 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 PXDC1Q5TGL8 231 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 TMEM14EPQ6UXP3 125 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 VKORC1L1Q8N0U8 176 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 LINC00311Q8N616 119 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 RAB39BQ96DA2 213 aa16.93■□□□□ 0.3
VPS28-209ENST00000528142 QTRT1Q9BXR0 403 aaKnown RBP16.93■□□□□ 0.3
VPS28-209ENST00000528142 METTL15P1P0C7V9 234 aa16.92■□□□□ 0.3
VPS28-209ENST00000528142 ERVK-16P61578 105 aa16.92■□□□□ 0.3
VPS28-209ENST00000528142 SPANXN5Q5MJ07 72 aa16.92■□□□□ 0.3
VPS28-209ENST00000528142 SSX9Q7RTT3 188 aa16.92■□□□□ 0.3
VPS28-209ENST00000528142 USP9XQ93008 2570 aaPredicted RBP16.92■□□□□ 0.3
VPS28-209ENST00000528142 DFFBO76075 338 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 CRYZL1O95825 349 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 ATP6V0CP27449 155 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 BLOC1S1P78537 153 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 RELBQ01201 579 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 DTD1Q8TEA8 209 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 LINC00052Q96N35 136 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 PARP11Q9NR21 331 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 TMEM140Q9NV12 185 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 RAB19A4D1S5 217 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 J3QR06 171 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 GPR37O15354 613 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 RBMXL2O75526 392 aaKnown RBP16.91■□□□□ 0.3
VPS28-209ENST00000528142 IGHV1-8P0DP01 117 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 ZP3P21754 424 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 BTNL8Q6UX41 500 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 ZDHHC16Q969W1 377 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 OR4C12Q96R67 309 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 TSNAXQ99598 290 aaKnown RBP16.91■□□□□ 0.3
VPS28-209ENST00000528142 MMP26Q9NRE1 261 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 CACFD1Q9UGQ2 172 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 ABCA4P78363 2273 aa16.91■□□□□ 0.3
VPS28-209ENST00000528142 HRNRQ86YZ3 2850 aaPredicted RBP16.9■□□□□ 0.3
VPS28-209ENST00000528142 NUDT19A8MXV4 375 aa16.9■□□□□ 0.3
VPS28-209ENST00000528142 OR2B8PP59922 312 aa16.9■□□□□ 0.3
VPS28-209ENST00000528142 POU2AF1Q16633 256 aa16.9■□□□□ 0.3
VPS28-209ENST00000528142 PDLIM3Q53GG5 364 aaPredicted RBP16.9■□□□□ 0.3
VPS28-209ENST00000528142 OR52E5Q8NH55 327 aa16.9■□□□□ 0.3
VPS28-209ENST00000528142 CIB3Q96Q77 187 aaPredicted RBP16.9■□□□□ 0.3
VPS28-209ENST00000528142 MIOXQ9UGB7 285 aa16.9■□□□□ 0.3
VPS28-209ENST00000528142 RFNGQ9Y644 331 aa16.9■□□□□ 0.3
VPS28-209ENST00000528142 TRAV3A0A0B4J244 114 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 RAB5CP51148 216 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 SRSF1Q07955 248 aaKnown RBP eCLIP16.89■□□□□ 0.29
VPS28-209ENST00000528142 Q6ZRG5 221 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 ZNF525Q8N782 197 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 LYPD6BQ8NI32 183 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 RAB1CQ92928 201 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 HRH4Q9H3N8 390 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 KRBOX1C9JBD0 128 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 SHOXO15266 292 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 HBG1P69891 147 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 HBG2P69892 147 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 UQCC3Q6UW78 93 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 OR4A16Q8NH70 328 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms