RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 GRPEL2Q8TAA5 225 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 C15orf40Q8WUR7 153 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 LRRC29Q8WV35 223 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 ITLN2Q8WWU7 325 aaPredicted RBP3.46□□□□□ -1.86
CD44-226ENST00000527889 MRPL24Q96A35 216 aaKnown RBP3.46□□□□□ -1.86
CD44-226ENST00000527889 UPRTQ96BW1 309 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 WDR13Q9H1Z4 485 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 DPAGT1Q9H3H5 408 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 SEBOXQ9HB31 216 aaPredicted RBP3.46□□□□□ -1.86
CD44-226ENST00000527889 OR2S2Q9NQN1 319 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 CA10Q9NS85 328 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 C1orf123Q9NWV4 160 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 SDHAF2Q9NX18 166 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 OPN4Q9UHM6 478 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 AK3Q9UIJ7 227 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 ALG5Q9Y673 324 aa3.46□□□□□ -1.86
CD44-226ENST00000527889 ACANP16112 2415 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 IGLV3-9A0A075B6K5 115 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 IGHV3OR15-7A0A075B7D8 119 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TRAV39A0A0B4J263 110 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TRAV24A0A0B4J272 114 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TEX13DA0A0J9YY54 714 aaPredicted RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 NAP1L6A6NFF2 107 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 ZNF736B4DX44 427 aaPredicted RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 INMT-MINDY4F8WBC2 141 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 RNASEK-C17orf49H0YIS7 233 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 C19orf84I3L1E1 186 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 M0R036 132 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SIRPB1O00241 398 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SDCBPO00560 298 aaPredicted RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 ARPC1BO15143 372 aaKnown RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 IGHV1-46P01743 117 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 OR4A8P0C604 315 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 FUT3P21217 361 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 GLRA1P23415 457 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 LOXP28300 417 aaPredicted RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 HRH1P35367 487 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 PMELP40967 661 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 CD200P41217 278 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 MEOX2P50222 304 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 RAB13P51153 203 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TNFAIP6P98066 277 aaPredicted RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 SSBP1Q04837 148 aaKnown RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 TNFRSF9Q07011 255 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 CD300CQ08708 224 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 FOXE3Q13461 319 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 MICBQ29980 383 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SCGB2B2Q4G0G5 96 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 PIK3CD-AS1Q5SR53 167 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 FAM201AQ5SY85 155 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 Q6P435 159 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 WDR82Q6UXN9 313 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 ACP7Q6ZNF0 438 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 Q6ZPA2 131 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TGIF2LYQ8IUE0 185 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 C1orf174Q8IYL3 243 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 BPIFB2Q8N4F0 458 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 CCDC71LQ8N9Z2 235 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SUMF2Q8NBJ7 301 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 POC1AQ8NBT0 407 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 DUSP18Q8NEJ0 188 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 BEST4Q8NFU0 473 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 STOML3Q8TAV4 291 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 MARCH1Q8TCQ1 289 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 RDH5Q92781 318 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 MRPS24Q96EL2 167 aaKnown RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 PIK3IP1Q96FE7 263 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 GRAMD2BQ96HH9 432 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 OR2V2Q96R30 315 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 RAB40CQ96S21 281 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 PFDN5Q99471 154 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SLC6A7Q99884 636 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 CMSS1Q9BQ75 279 aaKnown RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 NRIP2Q9BQI9 281 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 GINS4Q9BRT9 223 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 KRTAP4-11Q9BYQ6 195 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 KRTAP4-2Q9BYR5 136 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SIRPDQ9H106 197 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TLNRD1Q9H1K6 362 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 C20orf85Q9H1P6 137 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 PPA2Q9H2U2 334 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 ZNF442Q9H7R0 627 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TAS2R8Q9NYW2 309 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 TREM2Q9NZC2 230 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 EHFQ9NZC4 300 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 ANAPC10Q9UM13 185 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 POLDIP2Q9Y2S7 368 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 RNF115Q9Y4L5 304 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 NUBP2Q9Y5Y2 271 aa3.45□□□□□ -1.86
CD44-226ENST00000527889 SONP18583 2426 aaKnown RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 PRRC2AP48634 2157 aaKnown RBP3.45□□□□□ -1.86
CD44-226ENST00000527889 PCLOQ9Y6V0 5065 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 TMEM213A2RRL7 107 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 FAM172BPA6NC97 362 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 FAM90A10PA6NDY2 464 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 DEFB108AA8MXU0 73 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 SRRM5B3KS81 715 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 DISC1C4P0D8 188 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 M0R233 179 aa3.44□□□□□ -1.86
CD44-226ENST00000527889 RAB29O14966 203 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms