RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 ZNF141Q15928 474 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 CCL15Q16663 113 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 MEIG1Q5JSS6 88 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 VAX1Q5SQQ9 334 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FAM120AOSQ5T036 256 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 C10orf91Q5T1B1 145 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FBXW12Q6X9E4 464 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 DNM1P46Q6ZS02 220 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 GTF2H5Q6ZYL4 71 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 MRPL55Q7Z7F7 128 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 LRP11Q86VZ4 500 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 KRTAP11-1Q8IUC1 163 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 PIANPQ8IYJ0 282 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 SAXO1Q8IYX7 474 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 C1orf158Q8N1D5 194 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 COX18Q8N8Q8 333 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 DCAF4L2Q8NA75 395 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 OR51G1Q8NGK1 321 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 OR10D3Q8NH80 312 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 MFSD8Q8NHS3 518 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 ZNF564Q8TBZ8 553 aaPredicted RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 CT55Q8WUE5 264 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 RXFP2Q8WXD0 754 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 FGF11Q92914 225 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 MAGOHBQ96A72 148 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 PNPLA2Q96AD5 504 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 SLC25A38Q96DW6 304 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 LYSMD1Q96S90 227 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 MCHR1Q99705 422 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 PRADC1Q9BSG0 188 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 PBDC1Q9BVG4 233 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 OCR1Q9BZK8 76 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 COA1Q9GZY4 146 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 OR51E2Q9H255 320 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 TMEM133Q9H2Q1 129 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 C3orf14Q9HBI5 128 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 NOX3Q9HBY0 568 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 EXOSC4Q9NPD3 245 aaKnown RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 ZNF331Q9NQX6 463 aaPredicted RBP1.77□□□□□ -2.13
CD44-216ENST00000525293 SMCO4Q9NRQ5 59 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 TMEM100Q9NV29 134 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 ZNF586Q9NXT0 402 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 POLR1DQ9Y2S0 133 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 CHD1O14646 1710 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 NALCNQ8IZF0 1738 aa1.77□□□□□ -2.13
CD44-216ENST00000525293 CCDC88BA6NC98 1476 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 TRAPPC8Q9Y2L5 1435 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 ZNFX1Q9P2E3 1918 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 TRAV26-2A0A0B4J265 109 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 A0A0D9SG52 128 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 FAM236AA0A1B0GUQ0 79 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 FAM236BA0A1B0GV22 79 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 OR51F1A6NGY5 319 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 RPL37AP8A6NKH3 93 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 B4DXG7 233 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 H3BQ15 152 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 K7ENP7 123 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 M0R129 80 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 UPK1AO00322 258 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 AGPAT2O15120 278 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 NPFFO15130 113 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 MRPS12O15235 138 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 TNFSF13O75888 250 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 DHRS3O75911 302 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 EPPINO95925 133 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 ATP5G1P05496 136 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 LGALS1P09382 135 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 HOXB7P09629 217 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 OR5AL1P0C617 328 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 OR5AC1P0C628 307 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 SPINK8P0C7L1 97 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 IGLC1P0CG04 106 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 PGA5P0DJD9 388 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 ADCYAP1P18509 176 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 ATF1P18846 271 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 CCL1P22362 96 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 NFYBP25208 207 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 LMO2P25791 158 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 ATP6V0CP27449 155 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 IMPA1P29218 277 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 SAA4P35542 130 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 ATP5G3P48201 142 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 RND2P52198 227 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 SUB1P53999 127 aaKnown RBP eCLIP1.76□□□□□ -2.13
CD44-216ENST00000525293 UBE2NP61088 152 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 GRB2P62993 217 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 RPL18AQ02543 176 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 ZNF92Q03936 586 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 PRDX1Q06830 199 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 DAZ2Q13117 558 aaKnown RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 DIAPH2-AS1Q14236 149 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 PMVKQ15126 192 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 MMDQ15546 238 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 MLF2Q15773 248 aaPredicted RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 UBE2SQ16763 222 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 CEACAM16Q2WEN9 425 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 LGALSLQ3ZCW2 172 aaPredicted RBP1.76□□□□□ -2.13
CD44-216ENST00000525293 SPANXN4Q5MJ08 99 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 FAM201AQ5SY85 155 aa1.76□□□□□ -2.13
CD44-216ENST00000525293 IBA57Q5T440 356 aaKnown RBP1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms