RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RPS23P62266 143 aaKnown RBP4.91□□□□□ -1.62
LSM1-202ENST00000520286 MRPS10P82664 201 aaKnown RBP4.91□□□□□ -1.62
LSM1-202ENST00000520286 FABP9Q0Z7S8 132 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 OR2F1Q13607 317 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 MAPK14Q16539 360 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 HENMT1Q5T8I9 393 aaKnown RBP4.91□□□□□ -1.62
LSM1-202ENST00000520286 TMEM244Q5VVB8 128 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 NOXRED1Q6NXP6 359 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ASCL4Q6XD76 172 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 PRSS58Q8IYP2 241 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 LINC00471Q8N535 108 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 OR13C9Q8NGT0 318 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 STOML3Q8TAV4 291 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 MAL2Q969L2 176 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ADAT1Q9BUB4 502 aaKnown RBP4.91□□□□□ -1.62
LSM1-202ENST00000520286 GGACTQ9BVM4 153 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 FXYD6Q9H0Q3 95 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 TLNRD1Q9H1K6 362 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 CXCL16Q9H2A7 254 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 CSNK1G1Q9HCP0 422 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ZNF331Q9NQX6 463 aaPredicted RBP4.91□□□□□ -1.62
LSM1-202ENST00000520286 SMCO4Q9NRQ5 59 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 CELA1Q9UNI1 258 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 ANAPC1Q9H1A4 1944 aa4.91□□□□□ -1.62
LSM1-202ENST00000520286 GCN1Q92616 2671 aaKnown RBP4.9□□□□□ -1.62
LSM1-202ENST00000520286 NUP210Q8TEM1 1887 aaPredicted RBP4.9□□□□□ -1.62
LSM1-202ENST00000520286 IGHV3-66A0A0C4DH42 116 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 A0A1B0GTI1 187 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 H0Y9J4 135 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 H3BN98 237 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 GABARAPH6UMI1 98 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 RPL36A-HNRNPH2H7BZ11 118 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 REM1O75628 298 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 SOX14O95416 240 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 CPSF4O95639 269 aaKnown RBP4.9□□□□□ -1.63
LSM1-202ENST00000520286 MT-ND4LP03901 98 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 CATP04040 527 aaKnown RBP4.9□□□□□ -1.63
LSM1-202ENST00000520286 PGA4P0DJD7 388 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 PGA3P0DJD8 388 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 PGA5P0DJD9 388 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 KCNE1P15382 129 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 HIST1H1BP16401 226 aaKnown RBP4.9□□□□□ -1.63
LSM1-202ENST00000520286 GABRG2P18507 467 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 CELP19835 753 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 RAB5CP51148 216 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 SMIM11AP58511 58 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 RAB2AP61019 212 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 MAXP61244 160 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 CDK6Q00534 326 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 ERCC8Q13216 396 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 INSL4Q14641 139 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 LINC00303Q3SY05 128 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 C2orf83Q53S99 150 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 FAM78AQ5JUQ0 283 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 ZNF322Q6U7Q0 402 aaPredicted RBP4.9□□□□□ -1.63
LSM1-202ENST00000520286 Q6ZS52 159 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 PCP2Q8IVA1 136 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 MKXQ8IYA7 352 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 C11orf72Q8NBR9 251 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 GPR32P1Q8NGA4 272 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 OR5M1Q8NGP8 315 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 ARL11Q969Q4 196 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 SCGB3A2Q96PL1 93 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 CHAC1Q9BUX1 264 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 TMED9Q9BVK6 235 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 C1orf198Q9H425 327 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 NOX3Q9HBY0 568 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 MYOZ1Q9NP98 299 aaPredicted RBP4.9□□□□□ -1.63
LSM1-202ENST00000520286 TVP23BQ9NYZ1 205 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 TNFSF18Q9UNG2 199 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 ANGPT4Q9Y264 503 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 BPTFQ12830 3046 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 NOTCH3Q9UM47 2321 aa4.9□□□□□ -1.63
LSM1-202ENST00000520286 LRP4O75096 1905 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 PLXNB3Q9ULL4 1909 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 MAST4O15021 2626 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 CNOT1A5YKK6 2376 aaKnown RBP4.89□□□□□ -1.63
LSM1-202ENST00000520286 A0A1W2PRF3 423 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 A0A1W2PRM7 423 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 WI2-2373I1.2A0A1W2PRP0 233 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 C11orf94C9JXX5 98 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 TCAPO15273 167 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 CCL16O15467 120 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 OR2T1O43869 369 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 GATBO75879 557 aaKnown RBP4.89□□□□□ -1.63
LSM1-202ENST00000520286 PRB1P04280 392 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 CBR1P16152 277 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 ATF1P18846 271 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 OR10A3P58181 314 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 PKIAP61925 76 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 IRF4Q15306 451 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 SLC25A35Q3KQZ1 300 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 PYY3Q5JQD4 70 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 UBE2NLQ5JXB2 153 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 DRAM2Q6UX65 266 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 Q8N976 141 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 MORN4Q8NDC4 146 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 DEFB124Q8NES8 71 aa4.89□□□□□ -1.63
LSM1-202ENST00000520286 OR1J4Q8NGS1 313 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms