RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 BLNKQ8WV28 456 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 IL19Q9UHD0 177 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 C12orf77C9JDV5 145 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 J3QR06 171 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 TNFRSF1AP19438 455 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 ARL3P36405 182 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 ERVFRD-1P60508 538 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 RPL23P62829 140 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 TFF3Q07654 80 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 RNF151Q2KHN1 245 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 KLF14Q8TD94 323 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 STARD4Q96DR4 205 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 ZNF703Q9H7S9 590 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 CBLN4Q9NTU7 201 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 SEMA5BQ9P283 1151 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 TRAV24A0A0B4J272 114 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 MGST3O14880 152 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 SLC31A2O15432 143 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 CT45A10P0DMU9 189 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 SSTR5P35346 364 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 NMSQ5H8A3 153 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 ZNF324BQ6AW86 544 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 PLPPR1Q8TBJ4 325 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 SIGLEC12Q96PQ1 595 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 PHF3Q92576 2039 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 GRIFINA4D1Z8 144 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 ZNF891A8MT65 544 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 C17orf98A8MV24 154 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 WNT9BO14905 357 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 KLF7O75840 302 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 FAM214BQ7L5A3 538 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 ABHD12Q8N2K0 398 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 OR1L4Q8NGR5 311 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 FAM216AQ8WUB2 273 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 MISP3Q96FF7 219 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 QTRT1Q9BXR0 403 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 OR51B2Q9Y5P1 312 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 DIRC3C9JPN6 131 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 ORM2P19652 201 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 BRS3P32247 399 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 TMEM42Q69YG0 159 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 TGIF2LYQ8IUE0 185 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 OR8I2Q8N0Y5 310 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 HIST3H2BBQ8N257 126 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 DEFB123Q8N688 67 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 MBD3L1Q8WWY6 194 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 GTF3AQ92664 365 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 SFRP2Q96HF1 295 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 MRPL18Q9H0U6 180 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 NDUFB3O43676 98 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 TOX4O94842 621 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 MPV17P39210 176 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 VKORC1L1Q8N0U8 176 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 RNF2Q99496 336 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 ZNF106Q9H2Y7 1883 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 M0R2Z0 102 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 CD55P08174 381 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 SPEM2Q0P670 501 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 HES1Q14469 280 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 PYY3Q5JQD4 70 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 GAL3ST2Q9H3Q3 398 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 DEPPQ9NTK1 212 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 TMEM140Q9NV12 185 aa7.12□□□□□ -1.27
LIMCH1-216ENST00000512820 ETV2O00321 342 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 NAPSAO96009 420 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 SOD3P08294 240 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 RNF224P0DH78 156 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 CEACAM1P13688 526 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 CHRNB4P30926 498 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 LCN2P80188 198 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 SLC35E4Q6ICL7 350 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 RNF7Q9UBF6 113 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 KIAA1671Q9BY89 1806 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 SERTM2A0A1B0GWG4 89 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 PRRG2O14669 202 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 APCSP02743 223 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 HGFACQ04756 655 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 OR5I1Q13606 314 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 LRRC10Q5BKY1 277 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 GGNQ86UU5 652 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 TGIF2LXQ8IUE1 241 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 BMPERQ8N8U9 685 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 LIME1Q9H400 295 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 TRAV1-1A0A0B4J248 108 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 TMPRSS2O15393 492 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 FOXL2NBQ6ZUU3 175 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 HIST1H2BLQ99880 126 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 TCF19Q9Y242 345 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 CACNA1EQ15878 2313 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 ATP5G3P48201 142 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 IL15RAQ13261 267 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 SRSF7Q16629 238 aaKnown RBP eCLIP7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 AARDQ4LEZ3 155 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 SPSB3Q6PJ21 355 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 BET1LQ9NYM9 111 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 SVILO95425 2214 aa7.11□□□□□ -1.27
LIMCH1-216ENST00000512820 TRBV24-1A0A075B6N3 115 aa7.1□□□□□ -1.27
LIMCH1-216ENST00000512820 NEURL1O76050 574 aa7.1□□□□□ -1.27
LIMCH1-216ENST00000512820 CBLN1P23435 193 aa7.1□□□□□ -1.27
LIMCH1-216ENST00000512820 CSN1S1P47710 185 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms