RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 DLX6P56179 175 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 MP68P56378 58 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 MAGOHP61326 146 aaKnown RBP2.95□□□□□ -1.94
CCDC39-207ENST00000495817 TIMM23BQ5SRD1 257 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 NIPAL1Q6NVV3 410 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 GID4Q8IVV7 300 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 ZNF664Q8N3J9 261 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 C2orf73Q8N5S3 287 aaPredicted RBP2.95□□□□□ -1.94
CCDC39-207ENST00000495817 CCDC112Q8NEF3 446 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 RNF133Q8WVZ7 376 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 APOBEC3DQ96AK3 386 aaPredicted RBP2.95□□□□□ -1.94
CCDC39-207ENST00000495817 TVP23CQ96ET8 276 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 B9D2Q9BPU9 175 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 OR2D2Q9H210 308 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 PLEKHJ1Q9NW61 149 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 USE1Q9NZ43 259 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 MMACHCQ9Y4U1 282 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 POLR3HQ9Y535 204 aaPredicted RBP2.95□□□□□ -1.94
CCDC39-207ENST00000495817 V9GYQ6 96 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 KIF24Q5T7B8 1368 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 SLX4Q8IY92 1834 aa2.95□□□□□ -1.94
CCDC39-207ENST00000495817 SHANK1Q9Y566 2161 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 SMIM23A6NLE4 172 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 F5H5K5 113 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 H3BMM0 161 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 SOX14O95416 240 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 CBR1P16152 277 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 LSM6P62312 80 aaKnown RBP2.94□□□□□ -1.94
CCDC39-207ENST00000495817 ARF6P62330 175 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 MRPS25P82663 173 aaKnown RBP2.94□□□□□ -1.94
CCDC39-207ENST00000495817 BAMBIQ13145 260 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 MED21Q13503 144 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 SPIN3Q5JUX0 258 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 LYZL2Q7Z4W2 148 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 FAM19A3Q7Z5A8 133 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 SLC51BQ86UW2 128 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 FER1L6-AS1Q8NA97 138 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 OR4P4Q8NGL7 312 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 UBE2WQ96B02 151 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 CCDC42Q96M95 316 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 METTL9Q9H1A3 318 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 ABCC12Q96J65 1359 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 COL4A1P02462 1669 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 CCDC88AQ3V6T2 1871 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 SZT2Q5T011 3432 aa2.94□□□□□ -1.94
CCDC39-207ENST00000495817 SPEF2Q9C093 1822 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 DICER1Q9UPY3 1922 aaKnown RBP2.93□□□□□ -1.94
CCDC39-207ENST00000495817 NUP205Q92621 2012 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 A0A0B4J2C4 111 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 CPSF4O95639 269 aaKnown RBP2.93□□□□□ -1.94
CCDC39-207ENST00000495817 IGLV6-57P01721 117 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 TCRBP04435 133 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 SPCS3P61009 180 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 RAB2AP61019 212 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 SKP2Q13309 424 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 IHHQ14623 411 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 SLC9A3R2Q15599 337 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 LGALSLQ3ZCW2 172 aaPredicted RBP2.93□□□□□ -1.94
CCDC39-207ENST00000495817 SLC36A2Q495M3 483 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 DEFB134Q4QY38 66 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 KRTCAP2Q8N6L1 136 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 KCTD4Q8WVF5 259 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 PRAP1Q96NZ9 151 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 METTL17Q9H7H0 456 aaPredicted RBP2.93□□□□□ -1.94
CCDC39-207ENST00000495817 C19orf12Q9NSK7 152 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 STOML2Q9UJZ1 356 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 SLC22A13Q9Y226 551 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 ZNF443Q9Y2A4 671 aaPredicted RBP2.93□□□□□ -1.94
CCDC39-207ENST00000495817 CENPFP49454 3210 aa2.93□□□□□ -1.94
CCDC39-207ENST00000495817 DUOX1Q9NRD9 1551 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 MYH2Q9UKX2 1941 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 A0A1W2PNN7 141 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 GNG14A0A1W2PPG7 69 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 H0Y980 276 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 ATP8B1O43520 1251 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 IGHMP01871 453 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 OCM2P0CE71 109 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 IDO1P14902 403 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 PVALBP20472 110 aaPredicted RBP2.92□□□□□ -1.94
CCDC39-207ENST00000495817 COL8A2P25067 703 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 S100A2P29034 98 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 CD79BP40259 229 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 RAB4BP61018 213 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 GTF2BQ00403 316 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 TMED2Q15363 201 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 TAF1AQ15573 450 aaPredicted RBP2.92□□□□□ -1.94
CCDC39-207ENST00000495817 GUK1Q16774 197 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 ACSM3Q53FZ2 586 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 CST9Q5W186 159 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 SMIM15Q7Z3B0 74 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 NIT1Q86X76 327 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 C10orf67Q8IYJ2 551 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 Q8N402 240 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 LFNGQ8NES3 379 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 NEK7Q8TDX7 302 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 AP3S1Q92572 193 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 CGREF1Q99674 301 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 PRRT1Q99946 306 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 TRIM4Q9C037 500 aa2.92□□□□□ -1.94
CCDC39-207ENST00000495817 GID8Q9NWU2 228 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms