RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 COPZ2Q9P299 210 aa9.79□□□□□ -0.84
UPF3A-210ENST00000493727 DNAH3Q8TD57 4116 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 BTBD17A6NE02 478 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 SLC22A5O76082 557 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 NDUFB6O95139 128 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 SLC6A1P30531 599 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 UBE2E1P51965 193 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 ZNF134P52741 427 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 SURF2Q15527 256 aaPredicted RBP9.78□□□□□ -0.84
UPF3A-210ENST00000493727 HLA-DRB5Q30154 266 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 PHLDA2Q53GA4 152 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 ZNF626Q68DY1 528 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 PLET1Q6UQ28 207 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 TMED4Q7Z7H5 227 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 CMTM1Q8IZ96 169 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 LINC00311Q8N616 119 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 ZNF645Q8N7E2 425 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 BEND2Q8NDZ0 799 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 OR11H6Q8NGC7 330 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 CREB3L1Q96BA8 519 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 S1PR3Q99500 378 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 C20orf85Q9H1P6 137 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 CCL28Q9NRJ3 127 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 ZNRD1Q9P1U0 126 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 FAM96BQ9Y3D0 163 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 NUBP2Q9Y5Y2 271 aa9.78□□□□□ -0.84
UPF3A-210ENST00000493727 TRAV6A0A075B6T7 132 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 SAA2-SAA4A0A096LPE2 208 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 M0QZ24 198 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 GPR31O00270 319 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 RAB29O14966 203 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 ARPC1BO15143 372 aaKnown RBP9.77□□□□□ -0.85
UPF3A-210ENST00000493727 TCRBP04435 133 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 FBP1P09467 338 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 SAA2P0DJI9 122 aaPredicted RBP9.77□□□□□ -0.85
UPF3A-210ENST00000493727 HTR1DP28221 377 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 UCP3P55916 312 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 SRSF4Q08170 494 aaKnown RBP9.77□□□□□ -0.85
UPF3A-210ENST00000493727 TRIM16LQ309B1 348 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 PLA1AQ53H76 456 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 HCP5Q6MZN7 132 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 LINC00482Q8N8I6 264 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 CCDC71LQ8N9Z2 235 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 RPEQ96AT9 228 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 CITED1Q99966 193 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 GHITMQ9H3K2 345 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 NUDT15Q9NV35 164 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 VSIG4Q9Y279 399 aa9.77□□□□□ -0.85
UPF3A-210ENST00000493727 ODF3BA8MYP8 253 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 LEUTXA8MZ59 168 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 M0R1X1 148 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 NPFFO15130 113 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 TNFSF12O43508 249 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 GPR137BO60478 399 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 CTSDP07339 412 aaPredicted RBP9.76□□□□□ -0.85
UPF3A-210ENST00000493727 CEACAM3P40198 252 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 IER3P46695 156 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 RPL39P5Q59GN2 51 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 ZNF818PQ6ZRF7 136 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 CENPSQ8N2Z9 138 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 DRAM1Q8N682 238 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.76□□□□□ -0.85
UPF3A-210ENST00000493727 ZBTB34Q8NCN2 500 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 OR4P4Q8NGL7 312 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 MRGPRFQ96AM1 343 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 ZNF486Q96H40 463 aaPredicted RBP9.76□□□□□ -0.85
UPF3A-210ENST00000493727 AKR1E2Q96JD6 320 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 AGMATQ9BSE5 352 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 DPM3Q9P2X0 92 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 FLVCR2Q9UPI3 526 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 TBL2Q9Y4P3 447 aaKnown RBP9.76□□□□□ -0.85
UPF3A-210ENST00000493727 RYR3Q15413 4870 aa9.76□□□□□ -0.85
UPF3A-210ENST00000493727 NBEAL2Q6ZNJ1 2754 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 TEX13DA0A0J9YY54 714 aaPredicted RBP9.75□□□□□ -0.85
UPF3A-210ENST00000493727 A0A0U1RQK1 487 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 BUB1B-PAK6H3BSN5 160 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 IGLV1-47P01700 117 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 SPNP16150 400 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 AKR1C4P17516 323 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 GNRHRP30968 328 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 SAA4P35542 130 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 REG1BP48304 166 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 PIGPP57054 158 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 RAB25P57735 213 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 TAS2R31P59538 309 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 MSMO1Q15800 293 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 MINOS1Q5TGZ0 78 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 C11orf88Q6PI97 169 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 TEPPQ6URK8 271 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 CCBE1Q6UXH8 406 aaPredicted RBP9.75□□□□□ -0.85
UPF3A-210ENST00000493727 TGIF2LXQ8IUE1 241 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 MINDY2Q8NBR6 621 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 DUSP18Q8NEJ0 188 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 C5orf66Q9H5L9 145 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 SLC2A9Q9NRM0 540 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 SDHAF2Q9NX18 166 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 GPR132Q9UNW8 380 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 MINOS1-NBL1R4GNA1 71 aa9.75□□□□□ -0.85
UPF3A-210ENST00000493727 INMT-MINDY4F8WBC2 141 aa9.74□□□□□ -0.85
UPF3A-210ENST00000493727 IGHV4-59P01825 116 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms