RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 LEAP2Q969E1 77 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 LHX4Q969G2 390 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 SEC22AQ96IW7 307 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 ST6GAL2Q96JF0 529 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 RANBP3Q9H6Z4 567 aaPredicted RBP7.83□□□□□ -1.16
USP54-214ENST00000492357 SIRT7Q9NRC8 400 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 SLC35D1Q9NTN3 355 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 CREBBPQ92793 2442 aa7.83□□□□□ -1.16
USP54-214ENST00000492357 IGHV1-69DA0A0B4J2H0 117 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 IGHV1-3A0A0C4DH29 117 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 CENPVL3A0A0U1RRI6 287 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 MARCH11A6NNE9 402 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 H0YJW9 148 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 GOSR2O14653 212 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 NPFFO15130 113 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 TNFSF12O43508 249 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 SCAF4O95104 1147 aaKnown RBP7.82□□□□□ -1.16
USP54-214ENST00000492357 IGHV1-69P01742 117 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 C1QBP02746 253 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 P0C879 139 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 CXCL3P19876 107 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 COX7A1P24310 79 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 AKR1C2P52895 323 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 BRWD1-AS2P59051 145 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 IL15RAQ13261 267 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 EBI3Q14213 229 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 SP6Q3SY56 376 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 GGNBP1Q5YKI7 109 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 FAM53AQ6NSI3 398 aaPredicted RBP7.82□□□□□ -1.16
USP54-214ENST00000492357 C9orf139Q6ZV77 190 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 ZNF383Q8NA42 475 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 LHFPL5Q8TAF8 219 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 FLYWCH2Q96CP2 140 aaKnown RBP7.82□□□□□ -1.16
USP54-214ENST00000492357 FYTTD1Q96QD9 318 aaKnown RBP7.82□□□□□ -1.16
USP54-214ENST00000492357 PDCD10Q9BUL8 212 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 MEGF9Q9H1U4 602 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 C7orf69Q9H7B7 122 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 TMEM160Q9NX00 188 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 BET1LQ9NYM9 111 aa7.82□□□□□ -1.16
USP54-214ENST00000492357 ABCA2Q9BZC7 2435 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 A0A1W2PPE3 182 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 A0A1W2PPI3 338 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 C5orf51A6NDU8 294 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 FCGR3BO75015 233 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 TGFAP01135 160 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 FSHBP01225 129 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 FOSL1P15407 271 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 H2BFSP57053 126 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 SCGB2A2Q13296 93 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 SMCO1Q147U7 214 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 IAH1Q2TAA2 248 aaPredicted RBP7.81□□□□□ -1.16
USP54-214ENST00000492357 PDLIM3Q53GG5 364 aaPredicted RBP7.81□□□□□ -1.16
USP54-214ENST00000492357 HIST2H2BCQ6DN03 193 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 LYZL2Q7Z4W2 148 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 ZNF429Q86V71 674 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 ZBTB8BQ8NAP8 495 aaPredicted RBP7.81□□□□□ -1.16
USP54-214ENST00000492357 UXS1Q8NBZ7 420 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 OR52E5Q8NH55 327 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 RNASE11Q8TAA1 199 aaKnown RBP7.81□□□□□ -1.16
USP54-214ENST00000492357 R3HDM4Q96D70 268 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 RHOVQ96L33 236 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 HYLS1Q96M11 299 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 TSNAXQ99598 290 aaKnown RBP7.81□□□□□ -1.16
USP54-214ENST00000492357 MRPL20Q9BYC9 149 aaKnown RBP7.81□□□□□ -1.16
USP54-214ENST00000492357 FKBP11Q9NYL4 201 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 ZNF257Q9Y2Q1 563 aa7.81□□□□□ -1.16
USP54-214ENST00000492357 POLQO75417 2590 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 CR1P17927 2039 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 HMSDA8MTL9 139 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 RAMP3O60896 148 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 PITX3O75364 302 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 MED6O75586 246 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 ADAP1O75689 374 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 IGKV1-39P01597 117 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 IGHV3-7P01780 117 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 RLN2P04090 185 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 IGKV1D-39P04432 117 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 IL6RP08887 468 aaPredicted RBP7.8□□□□□ -1.16
USP54-214ENST00000492357 HOXB5P09067 269 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 FBP1P09467 338 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 SLC25A4P12235 298 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 LYL1P12980 280 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 PSMB6P28072 239 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 MAS1LP35410 378 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 ATP5IP56385 69 aaPredicted RBP7.8□□□□□ -1.16
USP54-214ENST00000492357 UBE2KP61086 200 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 VMA21Q3ZAQ7 101 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 LINC01559Q495D7 138 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 UTF1Q5T230 341 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 TMEM65Q6PI78 240 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 SPNS3Q6ZMD2 512 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 H2BFWTQ7Z2G1 175 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 TEX45Q8NA69 505 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 WFDC11Q8NEX6 87 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 OR2T35Q8NGX2 323 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 NANPQ8TBE9 248 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 CFHR4Q92496 578 aa7.8□□□□□ -1.16
USP54-214ENST00000492357 MS4A7Q9GZW8 240 aaPredicted RBP7.8□□□□□ -1.16
USP54-214ENST00000492357 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.8□□□□□ -1.16
USP54-214ENST00000492357 PRNDQ9UKY0 176 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms