RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 GPR146Q96CH1 333 aa8.45□□□□□ -1.06
HDAC3-210ENST00000490808 NEIL1Q96FI4 390 aaPredicted RBP8.45□□□□□ -1.06
HDAC3-210ENST00000490808 CIB3Q96Q77 187 aaPredicted RBP8.45□□□□□ -1.06
HDAC3-210ENST00000490808 TMUB1Q9BVT8 246 aa8.45□□□□□ -1.06
HDAC3-210ENST00000490808 HIVEP2P31629 2446 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 NSD1Q96L73 2696 aaPredicted RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 PPIHO43447 177 aaKnown RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 HRASP01112 189 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 SELLP14151 372 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 FOSL1P15407 271 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 OMGP23515 440 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 DUTP33316 252 aaKnown RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 CDKN1AP38936 164 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 PDLIM4P50479 330 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 EIF4EBP1Q13541 118 aaPredicted RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 ZNF266Q14584 549 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 RTL8BQ17RB0 113 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 ZNF585BQ52M93 769 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 Q5PR19 223 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 TMEM200BQ69YZ2 307 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 DHRS7BQ6IAN0 325 aaPredicted RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 BTNL3Q6UXE8 466 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 SLC25A48Q6ZT89 311 aaKnown RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 STX12Q86Y82 276 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 TGIF2LYQ8IUE0 185 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 LYG1Q8N1E2 194 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 OR2C3Q8N628 320 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 DMBX1Q8NFW5 382 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 TNFRSF14Q92956 283 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 TMEM186Q96B77 213 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 PERPQ96FX8 193 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 PARP12Q9H0J9 701 aaKnown RBP8.44□□□□□ -1.06
HDAC3-210ENST00000490808 DCAF16Q9NXF7 216 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 PFDN2Q9UHV9 154 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 WSB1Q9Y6I7 421 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 SESN1Q9Y6P5 492 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 NAV3Q8IVL0 2385 aa8.44□□□□□ -1.06
HDAC3-210ENST00000490808 NIPBLQ6KC79 2804 aaeCLIP8.43□□□□□ -1.06
HDAC3-210ENST00000490808 LINC00862A6NCI5 91 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 SYNGR2O43760 224 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 SSSCA1O60232 199 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 FCGR3BO75015 233 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 PITX3O75364 302 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 RBMXL2O75526 392 aaKnown RBP8.43□□□□□ -1.06
HDAC3-210ENST00000490808 KRASP01116 189 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 APOA2P02652 100 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 NQO2P16083 231 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 CAV2P51636 162 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 ZNF816Q0VGE8 651 aaPredicted RBP8.43□□□□□ -1.06
HDAC3-210ENST00000490808 CT45A1Q5HYN5 189 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 ALKAL2Q6UX46 152 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 LYPD2Q6UXB3 125 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 LINC00311Q8N616 119 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 CT45A3Q8NHU0 189 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 RNF141Q8WVD5 230 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 PIMREGQ9BSJ6 248 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 C19orf12Q9NSK7 152 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 LYRM2Q9NU23 88 aaPredicted RBP8.43□□□□□ -1.06
HDAC3-210ENST00000490808 CACNG5Q9UF02 275 aa8.43□□□□□ -1.06
HDAC3-210ENST00000490808 YLPM1P49750 1951 aaKnown RBP8.42□□□□□ -1.06
HDAC3-210ENST00000490808 MARCH11A6NNE9 402 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 C17orf98A8MV24 154 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 CHST1O43916 411 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 DFFBO76075 338 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 IGKV1-39P01597 117 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 IGHV4-39P01824 125 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 IGKV1D-39P04432 117 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 LIPFP07098 398 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 GPR6P46095 362 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-210ENST00000490808 GNG10P50151 68 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 POLR2GP62487 172 aaKnown RBP eCLIP8.42□□□□□ -1.06
HDAC3-210ENST00000490808 GNB2P62879 340 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 HBG1P69891 147 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 HBG2P69892 147 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 ZNF273Q14593 569 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 CLEC12BQ2HXU8 276 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 MIDNQ504T8 468 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 PRAMEF5Q5TYX0 476 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 DUX4L9Q6RFH8 374 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-210ENST00000490808 UBAC2Q8NBM4 344 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 ZNF439Q8NDP4 499 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 OR10X1Q8NGY0 326 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 OR4A16Q8NH70 328 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 OR9G1Q8NH87 305 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 C8orf46Q8TAG6 207 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 FAM168AQ92567 244 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 R3HDM4Q96D70 268 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 SMIM8Q96KF7 97 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 GPHA2Q96T91 129 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 IFI27L2Q9H2X8 130 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 GSX1Q9H4S2 264 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-210ENST00000490808 MED9Q9NWA0 146 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 AMMECR1Q9Y4X0 333 aaPredicted RBP8.42□□□□□ -1.06
HDAC3-210ENST00000490808 ABCA2Q9BZC7 2435 aa8.42□□□□□ -1.06
HDAC3-210ENST00000490808 A0A087X0M5 115 aa8.41□□□□□ -1.06
HDAC3-210ENST00000490808 PPIAL4CA0A0B4J2A2 164 aa8.41□□□□□ -1.06
HDAC3-210ENST00000490808 A0A1B0GX30 115 aa8.41□□□□□ -1.06
HDAC3-210ENST00000490808 MEX3AA1L020 520 aaKnown RBP8.41□□□□□ -1.06
HDAC3-210ENST00000490808 LINC00473A8K010 186 aa8.41□□□□□ -1.06
HDAC3-210ENST00000490808 NUDT19A8MXV4 375 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms