RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 LINC00299Q6ZSB3 139 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 C3orf56Q8N813 242 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 C5orf56Q8N8D9 126 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 OR4C16Q8NGL9 310 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 LINC01006Q8NI28 216 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 S100ZQ8WXG8 99 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 RITA1Q96K30 269 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 PRRT1Q99946 306 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 FXYD6Q9H0Q3 95 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 SCP2D1Q9UJQ7 156 aa12.53□□□□□ -0.4
C9orf3-219ENST00000488186 SH2D7A6NKC9 451 aaPredicted RBP12.52□□□□□ -0.41
C9orf3-219ENST00000488186 CRYZL1O95825 349 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 IGKV1-16P04430 117 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 CNTFRP26992 372 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 KIR2DS2P43631 304 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 LGALS7P47929 136 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 PPP5CP53041 499 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 UCP3P55916 312 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 FAAP20Q6NZ36 180 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 Q8N9W7 124 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 OR51H1Q8NH63 302 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 ZFAND1Q8TCF1 268 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 HARBI1Q96MB7 349 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 ZNF702PQ9H963 129 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 PLSCR3Q9NRY6 295 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 LIN7CQ9NUP9 197 aaKnown RBP12.52□□□□□ -0.41
C9orf3-219ENST00000488186 SIGLEC9Q9Y336 463 aa12.52□□□□□ -0.41
C9orf3-219ENST00000488186 ANK2Q01484 3957 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 ECI1P42126 302 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 RPL30P62888 115 aaKnown RBP12.51□□□□□ -0.41
C9orf3-219ENST00000488186 PHLDA2Q53GA4 152 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 LIN54Q6MZP7 749 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 NPBQ8NG41 125 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 OR4S2Q8NH73 311 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 DDB2Q92466 427 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 GPHA2Q96T91 129 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 RSRP1Q9BUV0 290 aa12.51□□□□□ -0.41
C9orf3-219ENST00000488186 METTL1Q9UBP6 276 aaKnown RBP12.51□□□□□ -0.41
C9orf3-219ENST00000488186 CENPXA8MT69 81 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 RRHO14718 337 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 PGLYRP1O75594 196 aaPredicted RBP12.5□□□□□ -0.41
C9orf3-219ENST00000488186 AMY1AP04745 511 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 RLN1P04808 185 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 VSIG10L2P0DP72 767 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 PSG5Q15238 335 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 C5orf64Q2M2E5 130 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 VMA21Q3ZAQ7 101 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 TMEM177Q53S58 311 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 IDO2Q6ZQW0 420 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 Q6ZS46 218 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 SLC35E3Q7Z769 313 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 SPAG16Q8N0X2 631 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 OR51S1Q8NGJ8 323 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 OSR1Q8TAX0 266 aaPredicted RBP12.5□□□□□ -0.41
C9orf3-219ENST00000488186 CD300LFQ8TDQ1 290 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 ZNF486Q96H40 463 aaPredicted RBP12.5□□□□□ -0.41
C9orf3-219ENST00000488186 SCGB3A2Q96PL1 93 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 CLCC1Q96S66 551 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 FBXL15Q9H469 300 aa12.5□□□□□ -0.41
C9orf3-219ENST00000488186 C14orf166Q9Y224 244 aaKnown RBP12.5□□□□□ -0.41
C9orf3-219ENST00000488186 LINC00854A0A1B0GVQ3 168 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 KCNAB3O43448 404 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 SLC25A17O43808 307 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 SPDEFO95238 335 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 ZNF735P0CB33 412 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 EIF4EBP1Q13541 118 aaPredicted RBP12.49□□□□□ -0.41
C9orf3-219ENST00000488186 KLF9Q13886 244 aaPredicted RBP12.49□□□□□ -0.41
C9orf3-219ENST00000488186 BAK1Q16611 211 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 CENPVQ7Z7K6 275 aaPredicted RBP12.49□□□□□ -0.41
C9orf3-219ENST00000488186 LHFPL1Q86WI0 220 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 FOXRED2Q8IWF2 684 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 Q8N2B8 174 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 FAM71E2Q8N5Q1 922 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 CCDC71LQ8N9Z2 235 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 MARCH1Q8TCQ1 289 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 DEDD2Q8WXF8 326 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 TRIM63Q969Q1 353 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 AIFM2Q9BRQ8 373 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 HRASLSQ9HDD0 168 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 COPZ2Q9P299 210 aa12.49□□□□□ -0.41
C9orf3-219ENST00000488186 NDUFA3O95167 84 aa12.48□□□□□ -0.41
C9orf3-219ENST00000488186 HRASP01112 189 aa12.48□□□□□ -0.41
C9orf3-219ENST00000488186 PI3P19957 117 aa12.48□□□□□ -0.41
C9orf3-219ENST00000488186 TBC1D26Q86UD7 250 aa12.48□□□□□ -0.41
C9orf3-219ENST00000488186 AKIP1Q9NQ31 210 aa12.48□□□□□ -0.41
C9orf3-219ENST00000488186 HPRT1P00492 218 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 IGHG2P01859 326 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 PIGPP57054 158 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 ZNF846Q147U1 533 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 SURF2Q15527 256 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-219ENST00000488186 TMEM95Q3KNT9 176 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 KLHDC1Q8N7A1 406 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 TCTEX1D1Q8N7M0 179 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 OR13C8Q8NGS7 320 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 ABHD5Q8WTS1 349 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 WDR12Q9GZL7 423 aaKnown RBP12.47□□□□□ -0.41
C9orf3-219ENST00000488186 SLC2A9Q9NRM0 540 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 SERTAD4Q9NUC0 356 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 SLC2A8Q9NY64 477 aa12.47□□□□□ -0.41
C9orf3-219ENST00000488186 NAP1L6A6NFF2 107 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms