RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SDHAF2Q9NX18 166 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 TECRQ9NZ01 308 aaKnown RBP11.44□□□□□ -0.58
MCF2L-228ENST00000487354 MLXQ9UH92 298 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 ABCA13Q86UQ4 5058 aa11.44□□□□□ -0.58
MCF2L-228ENST00000487354 TMEM213A2RRL7 107 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 LGALS9O00182 355 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 CD3GP09693 182 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 TMEM50BP56557 158 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 C10orf55Q5SWW7 151 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 C19orf35Q6ZS72 473 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 FAM89BQ8N5H3 189 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 KCTD12Q96CX2 325 aaKnown RBP11.43□□□□□ -0.58
MCF2L-228ENST00000487354 TMEM80Q96HE8 168 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 PHB2Q99623 299 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 C9orf16Q9BUW7 83 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 RIMS4Q9H426 269 aaPredicted RBP11.43□□□□□ -0.58
MCF2L-228ENST00000487354 PLEKHJ1Q9NW61 149 aa11.43□□□□□ -0.58
MCF2L-228ENST00000487354 DYNC1H1Q14204 4646 aaKnown RBP11.42□□□□□ -0.58
MCF2L-228ENST00000487354 LOC102724200A0A096LPH7 203 aaPredicted RBP11.42□□□□□ -0.58
MCF2L-228ENST00000487354 IRGMA1A4Y4 181 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 CIB2O75838 187 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 SRMP19623 302 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 CELP19835 753 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 CBLN1P23435 193 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 UBE2KP61086 200 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 ATP5G2Q06055 141 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 TNXAQ16473 311 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 C15orf32Q32M92 178 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 CCDC140Q96MF4 163 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 OR2D2Q9H210 308 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 C12orf4Q9NQ89 552 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 DNAH17Q9UFH2 4485 aa11.42□□□□□ -0.58
MCF2L-228ENST00000487354 A8MWP6 167 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 SHOXO15266 292 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 OR2C1O95371 312 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 ATF4P18848 351 aaPredicted RBP11.41□□□□□ -0.58
MCF2L-228ENST00000487354 RASSF2P50749 326 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 TAS2R43P59537 309 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 LGALS9CQ6DKI2 356 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 LAIR2Q6ISS4 152 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 SLC16A13Q7RTY0 426 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 CEACAM19Q7Z692 300 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 TTC9CQ8N5M4 171 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 TEX45Q8NA69 505 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 NECAP1Q8NC96 275 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 GATAD1Q8WUU5 269 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 GFI1Q99684 422 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 ZNF430Q9H8G1 570 aaPredicted RBP11.41□□□□□ -0.58
MCF2L-228ENST00000487354 HSF4Q9ULV5 492 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 MGAT4AQ9UM21 535 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 TP53TG1Q9Y2A0 90 aa11.41□□□□□ -0.58
MCF2L-228ENST00000487354 LINC00473A8K010 186 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 TUSC2O75896 110 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 OR2J3O76001 311 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 BPNT1O95861 308 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 MAPK3P27361 379 aaPredicted RBP11.4□□□□□ -0.58
MCF2L-228ENST00000487354 PRR20EP86478 221 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 PRR20CP86479 221 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 PRR20DP86480 221 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 PRR20BP86481 221 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 PRR20AP86496 221 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 ST3GAL4Q11206 333 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 PLAC9Q5JTB6 97 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 ZFP1Q6P2D0 407 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 GPHB5Q86YW7 130 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 OR52B4Q8NGK2 314 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 ARHGAP5-AS1Q96IT6 56 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 CABLES2Q9BTV7 478 aa11.4□□□□□ -0.58
MCF2L-228ENST00000487354 A0A1B0GW64 132 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 EFCAB10A6NFE3 127 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 TRDCB7Z8K6 153 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 TEX22C9J3V5 150 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 GGCTO75223 188 aaKnown RBP11.39□□□□□ -0.59
MCF2L-228ENST00000487354 ATP5HO75947 161 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 SCAF4O95104 1147 aaKnown RBP11.39□□□□□ -0.59
MCF2L-228ENST00000487354 NDUFB8O95169 186 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 SAA1P0DJI8 122 aaPredicted RBP11.39□□□□□ -0.59
MCF2L-228ENST00000487354 DEFB135Q30KP9 77 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 IGSF11Q5DX21 431 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 GLT8D1Q68CQ7 371 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 ZNF57Q68EA5 555 aaPredicted RBP11.39□□□□□ -0.59
MCF2L-228ENST00000487354 SETD9Q8NE22 299 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 PHYHIPQ92561 330 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 PECRQ9BY49 303 aa11.39□□□□□ -0.59
MCF2L-228ENST00000487354 MPPED1O15442 326 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 SPRY2O43597 315 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 CRYZL1O95825 349 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 IGHV3-23P01764 117 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 DUTP33316 252 aaKnown RBP11.38□□□□□ -0.59
MCF2L-228ENST00000487354 BMI1P35226 326 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 WNT4P56705 351 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 RTL8BQ17RB0 113 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 VMA21Q3ZAQ7 101 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 ACSM3Q53FZ2 586 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 TM4SF20Q53R12 229 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 RBM48Q5RL73 367 aaKnown RBP11.38□□□□□ -0.59
MCF2L-228ENST00000487354 BTNL8Q6UX41 500 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 Q6ZWC4 215 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 OR4A4PQ8NGN8 299 aa11.38□□□□□ -0.59
MCF2L-228ENST00000487354 ACOT12Q8WYK0 555 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms